Information for 4-GGCCAATCGG (Motif 9)

C T A G C T A G A G T C G T A C C T G A G C T A A G C T G A T C T C A G A C T G
Reverse Opposite:
T G A C A G T C C T A G T C G A C G A T G A C T A C T G A C T G A G T C A G T C
p-value:1e-10
log p-value:-2.383e+01
Information Content per bp:1.735
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif7.76%
Number of Background Sequences with motif401.6
Percentage of Background Sequences with motif0.93%
Average Position of motif in Targets50.1 +/- 28.6bp
Average Position of motif in Background47.5 +/- 37.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GGCCAATCGG
AGCCAATCGG
 C T A G C T A G A G T C G T A C C T G A G C T A A G C T G A T C T C A G A C T G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.85
Offset:-5
Orientation:forward strand
Alignment:-----GGCCAATCGG
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T C T A G C T A G A G T C G T A C C T G A G C T A A G C T G A T C T C A G A C T G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---GGCCAATCGG
ACTAGCCAATCA-
 A C G T A C G T A C G T C T A G C T A G A G T C G T A C C T G A G C T A A G C T G A T C T C A G A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAATCGG------
TGGACCAATCAGCACTCT
 A C G T A C G T C T A G C T A G A G T C G T A C C T G A G C T A A G C T G A T C T C A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGCCAATCGG
TGCCAA----
 C T A G C T A G A G T C G T A C C T G A G C T A A G C T G A T C T C A G A C T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:6
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAATCGG----
ACNNCTAATTAGNNNN
 A C G T A C G T C T A G C T A G A G T C G T A C C T G A G C T A A G C T G A T C T C A G A C T G A C G T A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGCCAATCGG
CGTGCCAAG---
 A C G T A C G T C T A G C T A G A G T C G T A C C T G A G C T A A G C T G A T C T C A G A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

PH0107.1_Msx2/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GGCCAATCGG----
GAAGACCAATTAGCGCT
 A C G T A C G T A C G T C T A G C T A G A G T C G T A C C T G A G C T A A G C T G A T C T C A G A C T G A C G T A C G T A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGCCAATCGG
--CCAATCAA
 C T A G C T A G A G T C G T A C C T G A G C T A A G C T G A T C T C A G A C T G
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PH0098.1_Lhx8/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GGCCAATCGG----
CACCGCTAATTAGNNGN
 A C G T A C G T A C G T C T A G C T A G A G T C G T A C C T G A G C T A A G C T G A T C T C A G A C T G A C G T A C G T A C G T A C G T
G A T C T G C A G T A C G T A C T C A G T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A C T G A C T G A C T G C G A T