Information for 18-GGAAGGAAAGTCCTAG (Motif 38)

A C T G A C T G C G T A C G T A A C T G A C T G C G T A C G T A C G T A A C T G A C G T A G T C A G T C A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C T G A C T G C G T A A G T C A C G T A C G T A C G T A G T C A G T C A C G T A C G T A G T C A G T C
p-value:1e-4
log p-value:-1.083e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.3 +/- 19.7bp
Average Position of motif in Background57.4 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RELA/MA0107.1/Jaspar

Match Rank:1
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GGAAGGAAAGTCCTAG
----GGAAATTCCC--
 A C T G A C T G C G T A C G T A A C T G A C T G C G T A C G T A C G T A A C T G A C G T A G T C A G T C A C G T C G T A A C T G
A C G T A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGAAGGAAAGTCCTAG
AGAAACGAAAGT-----
 A C G T A C T G A C T G C G T A C G T A A C T G A C T G C G T A C G T A C G T A A C T G A C G T A G T C A G T C A C G T C G T A A C T G
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GGAAGGAAAGTCCTAG
----GGAAANCCCC--
 A C T G A C T G C G T A C G T A A C T G A C T G C G T A C G T A C G T A A C T G A C G T A G T C A G T C A C G T C G T A A C T G
A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GGAAGGAAAGTCCTAG
----GGAAATTCCC--
 A C T G A C T G C G T A C G T A A C T G A C T G C G T A C G T A C G T A A C T G A C G T A G T C A G T C A C G T C G T A A C T G
A C G T A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

PB0136.1_IRC900814_2/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGAAGGAAAGTCCTAG--
--ATGGAAAGTCGTAAAA
 A C T G A C T G C G T A C G T A A C T G A C T G C G T A C G T A C G T A A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T A C G T
A C G T A C G T C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGAAGGAAAGTCCTAG
--AAGGCAAGTGT---
 A C T G A C T G C G T A C G T A A C T G A C T G C G T A C G T A C G T A A C T G A C G T A G T C A G T C A C G T C G T A A C T G
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T

HSF4/MA0771.1/Jaspar

Match Rank:7
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GGAAGGAAAGTCCTAG--
-----GAANNTTCTAGAA
 A C T G A C T G C G T A C G T A A C T G A C T G C G T A C G T A C G T A A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G G C T A G C T A A G T C T C A G C G A T C G A T T A G C A G C T T C G A A T C G G T C A G C T A

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGAAGGAAAGTCCTAG--
---TAGAANVTTCTAGAA
 A C T G A C T G C G T A C G T A A C T G A C T G C G T A C G T A C G T A A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A

HSF2/MA0770.1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GGAAGGAAAGTCCTAG--
-----GAANGTTCTAGAA
 A C T G A C T G C G T A C G T A A C T G A C T G C G T A C G T A C G T A A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A

MF0003.1_REL_class/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GGAAGGAAAGTCCTAG
----GGAAATCCCC--
 A C T G A C T G C G T A C G T A A C T G A C T G C G T A C G T A C G T A A C T G A C G T A G T C A G T C A C G T C G T A A C T G
A C G T A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T