Information for 20-ACGATACARAAGG (Motif 35)

G T C A A T G C A C T G C G T A A C G T T G C A G T A C C G T A C T A G C G T A T C G A A C T G C A T G
Reverse Opposite:
G A T C A G T C A C G T A C G T A G T C A C G T A C T G A C G T T C G A G A C T A G T C A T C G A C G T
p-value:1e-6
log p-value:-1.593e+01
Information Content per bp:1.718
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.43%
Number of Background Sequences with motif44.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets39.9 +/- 28.9bp
Average Position of motif in Background48.3 +/- 37.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ACGATACARAAGG
--AAAACAAAGG-
 G T C A A T G C A C T G C G T A A C G T T G C A G T A C C G T A C T A G C G T A T C G A A C T G C A T G
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

HLTF/MA0109.1/Jaspar

Match Rank:2
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:ACGATACARAAGG--
-----NNATAAGGNN
 G T C A A T G C A C T G C G T A A C G T T G C A G T A C C G T A C T A G C G T A T C G A A C T G C A T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:ACGATACARAAGG
----RACAAWGG-
 G T C A A T G C A C T G C G T A A C G T T G C A G T A C C G T A C T A G C G T A T C G A A C T G C A T G
A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:ACGATACARAAGG-
----AACAKATGGY
 G T C A A T G C A C T G C G T A A C G T T G C A G T A C C G T A C T A G C G T A T C G A A C T G C A T G A C G T
A C G T A C G T A C G T A C G T C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:ACGATACARAAGG-
----AACAGATGGT
 G T C A A T G C A C T G C G T A A C G T T G C A G T A C C G T A C T A G C G T A T C G A A C T G C A T G A C G T
A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ACGATACARAAGG--
AAACAGACAAAGGAAT
 A C G T G T C A A T G C A C T G C G T A A C G T T G C A G T A C C G T A C T A G C G T A T C G A A C T G C A T G A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:ACGATACARAAGG-
----AACAGATGGC
 G T C A A T G C A C T G C G T A A C G T T G C A G T A C C G T A C T A G C G T A T C G A A C T G C A T G A C G T
A C G T A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:ACGATACARAAGG
----AACAAAGG-
 G T C A A T G C A C T G C G T A A C G T T G C A G T A C C G T A C T A G C G T A T C G A A C T G C A T G
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ACGATACARAAGG-----
-AAGGCCAGATGGTCCGG
 G T C A A T G C A C T G C G T A A C G T T G C A G T A C C G T A C T A G C G T A T C G A A C T G C A T G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:ACGATACARAAGG----
-----ACAAAGGNBCCT
 G T C A A T G C A C T G C G T A A C G T T G C A G T A C C G T A C T A G C G T A T C G A A C T G C A T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T