Information for 7-GAGGACAGTGAGG (Motif 16)

A C T G C G T A A C T G A C T G G T C A A T G C C G T A A C T G A C G T A C T G C G T A A C T G A C T G
Reverse Opposite:
G T A C G T A C A C G T A G T C G T C A A G T C A C G T A T C G A C G T A G T C A G T C A C G T A G T C
p-value:1e-9
log p-value:-2.255e+01
Information Content per bp:1.903
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.5 +/- 23.5bp
Average Position of motif in Background44.8 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAGGACAGTGAGG------
NGAGGTCANNGAGTTCANNN
 A C G T A C T G C G T A A C T G A C T G G T C A A T G C C G T A A C T G A C G T A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGGACAGTGAGG
TRAGGTCA------
 A C G T A C T G C G T A A C T G A C T G G T C A A T G C C G T A A C T G A C G T A C T G C G T A A C T G A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGGACAGTGAGG
GGGAGGACNG-----
 A C G T A C G T A C T G C G T A A C T G A C T G G T C A A T G C C G T A A C T G A C G T A C T G C G T A A C T G A C T G
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAGGACAGTGAGG-
NAGGTCANTGACCT
 A C T G C G T A A C T G A C T G G T C A A T G C C G T A A C T G A C G T A C T G C G T A A C T G A C T G A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGGACAGTGAGG
AGRGGTCA------
 A C G T A C T G C G T A A C T G A C T G G T C A A T G C C G T A A C T G A C G T A C T G C G T A A C T G A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAGGACAGTGAGG
CAAAGGTCAG-----
 A C G T A C G T A C T G C G T A A C T G A C T G G T C A A T G C C G T A A C T G A C G T A C T G C G T A A C T G A C T G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T

ZNF263/MA0528.1/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GAGGACAGTGAGG----
GGAGGAGGAGGGGGAGGAGGA
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C T G G T C A A T G C C G T A A C T G A C G T A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
C T A G C T A G C T G A C A T G T A C G G C T A C A T G T C A G T C G A T C A G C T A G C T A G C T A G T C A G C T G A C T A G C T A G C T G A C T A G C T A G C T G A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGGACAGTGAGG
AAGGCAAGTGT--
 A C T G C G T A A C T G A C T G G T C A A T G C C G T A A C T G A C G T A C T G C G T A A C T G A C T G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGGACAGTGAGG--
GTAGGTCACTGGGTCA
 A C G T A C T G C G T A A C T G A C T G G T C A A T G C C G T A A C T G A C G T A C T G C G T A A C T G A C T G A C G T A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAGGACAGTGAGG
AAGGTCAC-----
 A C T G C G T A A C T G A C T G G T C A A T G C C G T A A C T G A C G T A C T G C G T A A C T G A C T G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T