Information for 2-CGAGACTAAA (Motif 4)

A G T C A C T G C T G A C T A G C G T A A G T C A C G T C T G A C G T A C T G A
Reverse Opposite:
A G C T G A C T A G C T G T C A A C T G G C A T A G T C A G C T A G T C A C T G
p-value:1e-13
log p-value:-3.159e+01
Information Content per bp:1.844
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif26.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets52.8 +/- 26.4bp
Average Position of motif in Background48.3 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0036.1_Irf6_1/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CGAGACTAAA--
CTGATCGAAACCAAAGT
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C T G A C T A G C G T A A G T C A C G T C T G A C G T A C T G A A C G T A C G T
G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T

PB0034.1_Irf4_1/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CGAGACTAAA
CGTATCGAAACCAAA
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C T G A C T A G C G T A A G T C A C G T C T G A C G T A C T G A
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A

PB0035.1_Irf5_1/Jaspar

Match Rank:3
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CGAGACTAAA
ATAAACCGAAACCAA-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C T G A C T A G C G T A A G T C A C G T C T G A C G T A C T G A
C G T A C G A T C T G A C G T A C T G A G A T C G A T C C T A G C T G A C G T A C G T A T A G C G A T C C T G A T C G A A C G T

PB0037.1_Isgf3g_1/Jaspar

Match Rank:4
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------CGAGACTAAA
CAAAATCGAAACTAA-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C T G A C T A G C G T A A G T C A C G T C T G A C G T A C T G A
T G A C C T G A C T G A C G T A G C T A G C A T A G T C C T A G G T C A C G T A G C T A T A G C G A C T C G T A G C T A A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CGAGACTAAA
GNNACCGAGAATNNN
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C T G A C T A G C G T A A G T C A C G T C T G A C G T A C T G A
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

PB0139.1_Irf5_2/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CGAGACTAAA
TTGACCGAGAATTCC
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C T G A C T A G C G T A A G T C A C G T C T G A C G T A C T G A
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PB0140.1_Irf6_2/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CGAGACTAAA
NNNACCGAGAGTNNN
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C T G A C T A G C G T A A G T C A C G T C T G A C G T A C T G A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CGAGACTAAA---
ACCGTGACTAATTNN
 A C G T A C G T A G T C A C T G C T G A C T A G C G T A A G T C A C G T C T G A C G T A C T G A A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGAGACTAAA
BCAGACWA--
 A G T C A C T G C T G A C T A G C G T A A G T C A C G T C T G A C G T A C T G A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CGAGACTAAA
CCAGACAG--
 A G T C A C T G C T G A C T A G C G T A A G T C A C G T C T G A C G T A C T G A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T