Information for 4-TCCGCTGCCATCC (Motif 9)

A C G T A G T C A T G C A C T G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C G T A C T G A C T G G T A C C G T A A C T G A G T C A T C G A C T G C G T A
p-value:1e-10
log p-value:-2.476e+01
Information Content per bp:1.924
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.6 +/- 18.9bp
Average Position of motif in Background59.6 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TCCGCTGCCATCC--
---GCCGCCATCTTG
 A C G T A G T C A T G C A C T G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TCCGCTGCCATCC----
-ACTATGCCAACCTACC
 A C G T A G T C A T G C A C T G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TCCGCTGCCATCC--
---GCNGCCATCTTG
 A C G T A G T C A T G C A C T G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

PB0098.1_Zfp410_1/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TCCGCTGCCATCC-------
---NNNTCCATCCCATAANN
 A C G T A G T C A T G C A C T G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TCCGCTGCCATCC
----ATGCCAACC
 A C G T A G T C A T G C A C T G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A G T C A G T C
A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCCGCTGCCATCC-
GTCWGCTGTYYCTCT
 A C G T A C G T A G T C A T G C A C T G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A G T C A G T C A C G T
C T A G A C G T A G T C C G T A A C T G A G T C G C A T A C T G G C A T A G T C G A C T G A T C G C A T A G T C A G C T

HINFP/MA0131.2/Jaspar

Match Rank:7
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----TCCGCTGCCATCC
CAACGTCCGCGG------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T G C A C T G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A G T C A G T C
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:TCCGCTGCCATCC-----
---SCAGYCADGCATGAC
 A C G T A G T C A T G C A C T G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:TCCGCTGCCATCC
-----TGCCAA--
 A C G T A G T C A T G C A C T G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.50
Offset:3
Orientation:forward strand
Alignment:TCCGCTGCCATCC
---CGTGCCAAG-
 A C G T A G T C A T G C A C T G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A G T C A G T C
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T