Information for 15-GTCAGAGCGGCGT (Motif 26)

A C T G A C G T A G T C C G T A A T C G C G T A A C T G A G T C C T A G A C T G A T G C A C T G A C G T
Reverse Opposite:
C G T A A G T C A T C G A G T C A G T C A C T G A G T C A C G T A T G C A C G T A C T G C G T A A G T C
p-value:1e-8
log p-value:-1.916e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.8 +/- 24.4bp
Average Position of motif in Background92.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rhox11/MA0629.1/Jaspar

Match Rank:1
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GTCAGAGCGGCGT
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A T C G C G T A A C T G A G T C C T A G A C T G A T G C A C T G A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GTCAGAGCGGCGT
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A T C G C G T A A C T G A G T C C T A G A C T G A T G C A C T G A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GTCAGAGCGGCGT-
--CACAGCAGGGGG
 A C T G A C G T A G T C C G T A A T C G C G T A A C T G A G T C C T A G A C T G A T G C A C T G A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GTCAGAGCGGCGT
TCNCTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A T C G C G T A A C T G A G T C C T A G A C T G A T G C A C T G A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

ZIC1/MA0696.1/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GTCAGAGCGGCGT---
--CACAGCGGGGGGTC
 A C T G A C G T A G T C C G T A A T C G C G T A A C T G A G T C C T A G A C T G A T G C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGAGCGGCGT
NTGTCAN--------
 A C G T A C G T A C T G A C G T A G T C C G T A A T C G C G T A A C T G A G T C C T A G A C T G A T G C A C T G A C G T
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GTCAGAGCGGCGT---
-DCHCAGCAGGRGGCC
 A C T G A C G T A G T C C G T A A T C G C G T A A C T G A G T C C T A G A C T G A T G C A C T G A C G T A C G T A C G T A C G T
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GTCAGAGCGGCGT
----CAGCC----
 A C T G A C G T A G T C C G T A A T C G C G T A A C T G A G T C C T A G A C T G A T G C A C T G A C G T
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GTCAGAGCGGCGT
AGGTCACCCTGACCT
 A C G T A C G T A C T G A C G T A G T C C G T A A T C G C G T A A C T G A G T C C T A G A C T G A T G C A C T G A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

PB0157.1_Rara_2/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GTCAGAGCGGCGT------
---AGAGCGGGGTCAAGTA
 A C T G A C G T A G T C C G T A A T C G C G T A A C T G A G T C C T A G A C T G A T G C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A