Information for 4-GCGGCCAAAG (Motif 11)

A C T G A G T C A C T G C T A G A G T C A T G C C G T A G T C A G T C A A C T G
Reverse Opposite:
G T A C A C G T A C G T A C G T A T C G T C A G G A T C A G T C C T A G T G A C
p-value:1e-10
log p-value:-2.472e+01
Information Content per bp:1.834
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.31%
Number of Background Sequences with motif150.4
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets49.9 +/- 32.7bp
Average Position of motif in Background51.7 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)-2.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCGGCCAAAG----
AGAGTCCAAAGTCCA
 A C G T A C T G A G T C A C T G C T A G A G T C A T G C C G T A G T C A G T C A A C T G A C G T A C G T A C G T A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCGGCCAAAG----
CANAGNNCAAAGTCCA
 A C G T A C G T A C T G A G T C A C T G C T A G A G T C A T G C C G T A G T C A G T C A A C T G A C G T A C G T A C G T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCGGCCAAAG-
-GGAACAAAGR
 A C T G A G T C A C T G C T A G A G T C A T G C C G T A G T C A G T C A A C T G A C G T
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Hnf4a/MA0114.3/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCGGCCAAAG------
GGGGTCAAAGTCCAAT
 A C T G A G T C A C T G C T A G A G T C A T G C C G T A G T C A G T C A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCGGCCAAAG
--TGCCAA--
 A C T G A G T C A C T G C T A G A G T C A T G C C G T A G T C A G T C A A C T G
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCGGCCAAAG----
GGGGTCAAAGGTCA
 A C T G A G T C A C T G C T A G A G T C A T G C C G T A G T C A G T C A A C T G A C G T A C G T A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

RXRG/MA0856.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCGGCCAAAG----
GGGGTCAAAGGTCA
 A C T G A G T C A C T G C T A G A G T C A T G C C G T A G T C A G T C A A C T G A C G T A C G T A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCGGCCAAAG----
GGGGTCAAAGGTCA
 A C T G A G T C A C T G C T A G A G T C A T G C C G T A G T C A G T C A A C T G A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCGGCCAAAG
CGTGCCAAG-
 A C T G A G T C A C T G C T A G A G T C A T G C C G T A G T C A G T C A A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCGGCCAAAG----
TAGGGCAAAGGTCA
 A C T G A G T C A C T G C T A G A G T C A T G C C G T A G T C A G T C A A C T G A C G T A C G T A C G T A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A