Information for 4-CCCCCTGCTGTCCGTS (Motif 2)

A G T C A T G C A G T C A G T C A G T C A C G T A C T G A G T C C A G T A T C G A C G T A G T C A G T C C A T G A C G T A T G C
Reverse Opposite:
A T C G G T C A G A T C A C T G T A C G T C G A T A G C G C T A A C T G A G T C C G T A A C T G C T A G A C T G A T C G A C T G
p-value:1e-16
log p-value:-3.795e+01
Information Content per bp:1.773
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.7 +/- 14.9bp
Average Position of motif in Background55.8 +/- 16.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCCCCTGCTGTCCGTS
CCCCCTGCTGTG----
 A G T C A T G C A G T C A G T C A G T C A C G T A C T G A G T C C A G T A T C G A C G T A G T C A G T C C A T G A C G T A T G C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCTGTCCGTS
GACCCCCCGCTGTG----
 A C G T A C G T A G T C A T G C A G T C A G T C A G T C A C G T A C T G A G T C C A G T A T C G A C G T A G T C A G T C C A T G A C G T A T G C
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCTGTCCGTS
GGCCYCCTGCTGDGH---
 A C G T A C G T A G T C A T G C A G T C A G T C A G T C A C G T A C T G A G T C C A G T A T C G A C G T A G T C A G T C C A T G A C G T A T G C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCTGTCCGTS
GACCCCCCGCTGCGC---
 A C G T A C G T A G T C A T G C A G T C A G T C A G T C A C G T A C T G A G T C C A G T A T C G A C G T A G T C A G T C C A T G A C G T A T G C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCTGTCCGTS
GACCCCCCGCTGTGC---
 A C G T A C G T A G T C A T G C A G T C A G T C A G T C A C G T A C T G A G T C C A G T A T C G A C G T A G T C A G T C C A T G A C G T A T G C
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CCCCCTGCTGTCCGTS
TAGCGCCCCCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A G T C A T G C A G T C A G T C A G T C A C G T A C T G A G T C C A G T A T C G A C G T A G T C A G T C C A T G A C G T A T G C
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.65
Offset:-8
Orientation:forward strand
Alignment:--------CCCCCTGCTGTCCGTS
CNNBRGCGCCCCCTGSTGGC----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T G C A G T C A G T C A G T C A C G T A C T G A G T C C A G T A T C G A C G T A G T C A G T C C A T G A C G T A T G C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CCCCCTGCTGTCCGTS
ANAGTGCCACCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T G C A G T C A G T C A G T C A C G T A C T G A G T C C A G T A T C G A C G T A G T C A G T C C A T G A C G T A T G C
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCCCCTGCTGTCCGTS
AATCGCACTGCATTCCG--
 A C G T A C G T A C G T A G T C A T G C A G T C A G T C A G T C A C G T A C T G A G T C C A G T A T C G A C G T A G T C A G T C C A T G A C G T A T G C
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCTGTCCGTS
SNGCACCTGCHS------
 A C G T A C G T A G T C A T G C A G T C A G T C A G T C A C G T A C T G A G T C C A G T A T C G A C G T A G T C A G T C C A T G A C G T A T G C
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T