Information for 4-AGCCAGGCAGTAGAGG (Motif 4)

G T C A A C T G A G T C A G T C C G T A A T C G A T C G A T G C C G T A A C T G C G A T G T C A A C T G T C G A C T A G A C T G
Reverse Opposite:
A G T C A G T C A G C T A G T C C A G T C G T A G T A C C G A T A T C G A T G C A T G C C G A T A C T G A C T G A G T C A C G T
p-value:1e-13
log p-value:-3.046e+01
Information Content per bp:1.806
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.2 +/- 18.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---AGCCAGGCAGTAGAGG
CAAATCCAGACATCACA--
 A C G T A C G T A C G T G T C A A C T G A G T C A G T C C G T A A T C G A T C G A T G C C G T A A C T G C G A T G T C A A C T G T C G A C T A G A C T G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--AGCCAGGCAGTAGAGG
CGTGCCAAG---------
 A C G T A C G T G T C A A C T G A G T C A G T C C G T A A T C G A T C G A T G C C G T A A C T G C G A T G T C A A C T G T C G A C T A G A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:AGCCAGGCAGTAGAGG
TGCCAA----------
 G T C A A C T G A G T C A G T C C G T A A T C G A T C G A T G C C G T A A C T G C G A T G T C A A C T G T C G A C T A G A C T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.48
Offset:3
Orientation:forward strand
Alignment:AGCCAGGCAGTAGAGG------
---TGGCCACCAGGGGGCGCTA
 G T C A A C T G A G T C A G T C C G T A A T C G A T C G A T G C C G T A A C T G C G A T G T C A A C T G T C G A C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---AGCCAGGCAGTAGAGG
ACTAGCCAATCA-------
 A C G T A C G T A C G T G T C A A C T G A G T C A G T C C G T A A T C G A T C G A T G C C G T A A C T G C G A T G T C A A C T G T C G A C T A G A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---AGCCAGGCAGTAGAGG-
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A C G T G T C A A C T G A G T C A G T C C G T A A T C G A T C G A T G C C G T A A C T G C G A T G T C A A C T G T C G A C T A G A C T G A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:AGCCAGGCAGTAGAGG-
-NNNTGGCAGTTGGTNN
 G T C A A C T G A G T C A G T C C G T A A T C G A T C G A T G C C G T A A C T G C G A T G T C A A C T G T C G A C T A G A C T G A C G T
A C G T C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-AGCCAGGCAGTAGAGG
CAGCC------------
 A C G T G T C A A C T G A G T C A G T C C G T A A T C G A T C G A T G C C G T A A C T G C G A T G T C A A C T G T C G A C T A G A C T G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:9
Score:0.47
Offset:4
Orientation:reverse strand
Alignment:AGCCAGGCAGTAGAGG
----TGGCAGTTGN--
 G T C A A C T G A G T C A G T C C G T A A T C G A T C G A T G C C G T A A C T G C G A T G T C A A C T G T C G A C T A G A C T G
A C G T A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:AGCCAGGCAGTAGAGG-------
---TGGCCACCAGGTGGCACTNT
 G T C A A C T G A G T C A G T C C G T A A T C G A T C G A T G C C G T A A C T G C G A T G T C A A C T G T C G A C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T