Information for 9-CTCTCTGCCAATC (Motif 12)

A G T C A C G T A T G C A C G T A T G C A C G T A C T G A G T C A G T C C G T A C T G A A C G T A G T C
Reverse Opposite:
A C T G C G T A A G C T A C G T A C T G A C T G A G T C G T C A A T C G G T C A A T C G C G T A A C T G
p-value:1e-10
log p-value:-2.469e+01
Information Content per bp:1.928
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.8 +/- 23.2bp
Average Position of motif in Background89.7 +/- 3.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CTCTCTGCCAATC--
---SCTGTCAVTCAV
 A G T C A C G T A T G C A C G T A T G C A C G T A C T G A G T C A G T C C G T A C T G A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CTCTCTGCCAATC--
---NCTGTCAATCAN
 A G T C A C G T A T G C A C G T A T G C A C G T A C T G A G T C A G T C C G T A C T G A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CTCTCTGCCAATC
-----TGCCAA--
 A G T C A C G T A T G C A C G T A T G C A C G T A C T G A G T C A G T C C G T A C T G A A C G T A G T C
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CTCTCTGCCAATC--
-----AGCCAATCGG
 A G T C A C G T A T G C A C G T A T G C A C G T A C T G A G T C A G T C C G T A C T G A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CTCTCTGCCAATC-
--ACTAGCCAATCA
 A G T C A C G T A T G C A C G T A T G C A C G T A C T G A G T C A G T C C G T A C T G A A C G T A G T C A C G T
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTCTCTGCCAATC
---CGTGCCAAG-
 A G T C A C G T A T G C A C G T A T G C A C G T A C T G A G T C A G T C C G T A C T G A A C G T A G T C
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTCTCTGCCAATC
---GGTGCCAAGT
 A G T C A C G T A T G C A C G T A T G C A C G T A C T G A G T C A G T C C G T A C T G A A C G T A G T C
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFYB/MA0502.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTCTCTGCCAATC--
AAATGGACCAATCAG
 A G T C A C G T A T G C A C G T A T G C A C G T A C T G A G T C A G T C C G T A C T G A A C G T A G T C A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTCTCTGCCAATC----
-ACTATGCCAACCTACC
 A G T C A C G T A T G C A C G T A T G C A C G T A C T G A G T C A G T C C G T A C T G A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CTCTCTGCCAATC
----TTGCCAAG-
 A G T C A C G T A T G C A C G T A T G C A C G T A C T G A G T C A G T C C G T A C T G A A C G T A G T C
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T