Information for 5-CCTCAGTTAAAATGGC (Motif 9)

A G T C A G T C C G A T A G T C C G T A A T C G A C G T A G C T G T C A G C T A G C T A C G T A A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C G T C G A T C A G T A C G T C T G A C G T A A T G C A C G T A C T G C G T A A C T G A C T G
p-value:1e-12
log p-value:-2.974e+01
Information Content per bp:1.916
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.2 +/- 23.9bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.62
Offset:7
Orientation:forward strand
Alignment:CCTCAGTTAAAATGGC---
-------CAAGATGGCGGC
 A G T C A G T C C G A T A G T C C G T A A T C G A C G T A G C T G T C A G C T A G C T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.55
Offset:9
Orientation:reverse strand
Alignment:CCTCAGTTAAAATGGC----
---------TAATGGCGGNC
 A G T C A G T C C G A T A G T C C G T A A T C G A C G T A G C T G T C A G C T A G C T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.54
Offset:7
Orientation:forward strand
Alignment:CCTCAGTTAAAATGGC---
-------CAAGATGGCGGC
 A G T C A G T C C G A T A G T C C G T A A T C G A C G T A G C T G T C A G C T A G C T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

ISL2/MA0914.1/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCTCAGTTAAAATGGC
--GCACTTAA------
 A G T C A G T C C G A T A G T C C G T A A T C G A C G T A G C T G T C A G C T A G C T A C G T A A C G T A C T G A C T G A G T C
A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:5
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CCTCAGTTAAAATGGC
NNNTTAGTTAACTNANN
 A C G T A G T C A G T C C G A T A G T C C G T A A T C G A C G T A G C T G T C A G C T A G C T A C G T A A C G T A C T G A C T G A G T C
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

Nkx2-5/MA0063.1/Jaspar

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CCTCAGTTAAAATGGC
---CAATTAA------
 A G T C A G T C C G A T A G T C C G T A A T C G A C G T A G C T G T C A G C T A G C T A C G T A A C G T A C T G A C T G A G T C
A C G T A C G T A C G T G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CCTCAGTTAAAATGGC
NCWRWGTAAACANSV-
 A G T C A G T C C G A T A G T C C G T A A T C G A C G T A G C T G T C A G C T A G C T A C G T A A C G T A C T G A C T G A G T C
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CCTCAGTTAAAATGGC---
---AAATTCAAGTGGNTTN
 A G T C A G T C C G A T A G T C C G T A A T C G A C G T A G C T G T C A G C T A G C T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PH0167.1_Tcf1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CCTCAGTTAAAATGGC
NTTTTAGTTAACNNAGN
 A C G T A G T C A G T C C G A T A G T C C G T A A T C G A C G T A G C T G T C A G C T A G C T A C G T A A C G T A C T G A C T G A G T C
T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

Arid3b/MA0601.1/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CCTCAGTTAAAATGGC
--NTAATTAATAT---
 A G T C A G T C C G A T A G T C C G T A A T C G A C G T A G C T G T C A G C T A G C T A C G T A A C G T A C T G A C T G A G T C
A C G T A C G T A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T