Information for 15-ATTAMAGCWCWTRRYW (Motif 25)

C G T A A C G T A C G T G C T A G T A C C G T A A C T G G T A C C G T A A G T C C G A T A C G T T C A G C T G A A G T C C G T A
Reverse Opposite:
C G A T C T A G A G C T A G C T C G T A C G T A A C T G C G A T A C T G A G T C A C G T A C T G C A G T C G T A C G T A C G A T
p-value:1e-8
log p-value:-2.009e+01
Information Content per bp:1.814
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.2 +/- 30.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0116.1_Nkx2-9/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ATTAMAGCWCWTRRYW
NATTTAAGTACTTNAAA
 A C G T C G T A A C G T A C G T G C T A G T A C C G T A A C T G G T A C C G T A A G T C C G A T A C G T T C A G C T G A A G T C C G T A
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATTAMAGCWCWTRRYW
TCNNTTTACAGCGNNNT---
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T G C T A G T A C C G T A A C T G G T A C C G T A A G T C C G A T A C G T T C A G C T G A A G T C C G T A
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T A C G T A C G T

PH0157.1_Rhox11_1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATTAMAGCWCWTRRYW
TCNNTTTACAGCGNNNT---
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T G C T A G T A C C G T A A C T G G T A C C G T A A G T C C G A T A C G T T C A G C T G A A G T C C G T A
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATTAMAGCWCWTRRYW
TCNCTTTACAGCGNNNT---
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T G C T A G T A C C G T A A C T G G T A C C G T A A G T C C G A T A C G T T C A G C T G A A G T C C G T A
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T A C G T A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATTAMAGCWCWTRRYW
NATTTAAGTACTTANNA
 A C G T C G T A A C G T A C G T G C T A G T A C C G T A A C T G G T A C C G T A A G T C C G A T A C G T T C A G C T G A A G T C C G T A
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ATTAMAGCWCWTRRYW
CTTTAAGTACTTAATG
 C G T A A C G T A C G T G C T A G T A C C G T A A C T G G T A C C G T A A G T C C G A T A C G T T C A G C T G A A G T C C G T A
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

Arid3a/MA0151.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ATTAMAGCWCWTRRYW
ATTAAA----------
 C G T A A C G T A C G T G C T A G T A C C G T A A C T G G T A C C G T A A G T C C G A T A C G T T C A G C T G A A G T C C G T A
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-ATTAMAGCWCWTRRYW
AATTAGTG---------
 A C G T C G T A A C G T A C G T G C T A G T A C C G T A A C T G G T A C C G T A A G T C C G A T A C G T T C A G C T G A A G T C C G T A
T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSX2/MA0893.1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----ATTAMAGCWCWTRRYW
ACTAATTAAA----------
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T G C T A G T A C C G T A A C T G G T A C C G T A A G T C C G A T A C G T T C A G C T G A A G T C C G T A
G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:ATTAMAGCWCWTRRYW
----AAGCACTTAA--
 C G T A A C G T A C G T G C T A G T A C C G T A A C T G G T A C C G T A A G T C C G A T A C G T T C A G C T G A A G T C C G T A
A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T