Information for 3-TTGGCGATCA (Motif 12)

A G C T A C G T A C T G A T C G A T G C A C T G G C T A A C G T A T G C C G T A
Reverse Opposite:
A C G T A T C G C G T A C G A T A G T C A T C G A T G C G T A C C G T A C T G A
p-value:1e-10
log p-value:-2.347e+01
Information Content per bp:1.864
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif31.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets56.6 +/- 29.3bp
Average Position of motif in Background53.3 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTGGCGATCA
TTGGCA----
 A G C T A C G T A C T G A T C G A T G C A C T G G C T A A C G T A T G C C G T A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCGATCA
NTTGGCANN--
 A C G T A G C T A C G T A C T G A T C G A T G C A C T G G C T A A C G T A T G C C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTGGCGATCA-
SCTGTCAVTCAV
 A C G T A G C T A C G T A C T G A T C G A T G C A C T G G C T A A C G T A T G C C G T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTGGCGATCA-
NCTGTCAATCAN
 A C G T A G C T A C G T A C T G A T C G A T G C A C T G G C T A A C G T A T G C C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

YY2/MA0748.1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCGATCA
TAATGGCGGNC-
 A C G T A C G T A G C T A C G T A C T G A T C G A T G C A C T G G C T A A C G T A T G C C G T A
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTGGCGATCA---
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T C G A T G C A C T G G C T A A C G T A T G C C G T A A C G T A C G T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TTGGCGATCA-
---CCAATCAA
 A G C T A C G T A C T G A T C G A T G C A C T G G C T A A C G T A T G C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCGATCA
NNTTGGCANN--
 A C G T A C G T A G C T A C G T A C T G A T C G A T G C A C T G G C T A A C G T A T G C C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TTGGCGATCA--
--GGCCATTAAC
 A G C T A C G T A C T G A T C G A T G C A C T G G C T A A C G T A T G C C G T A A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

E2F1/MA0024.3/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTGGCGATCA-
TTTGGCGCCAAA
 A C G T A G C T A C G T A C T G A T C G A T G C A C T G G C T A A C G T A T G C C G T A A C G T
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A