Information for 12-AGAGGACAGG (Motif 39)

C G T A T C A G C T G A C A T G T A C G C G T A A T G C C T G A A C T G C A T G
Reverse Opposite:
G T A C A G T C A G C T A T C G G C A T A T G C G T A C A G C T A G T C G C A T
p-value:1e-5
log p-value:-1.377e+01
Information Content per bp:1.827
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.97%
Number of Background Sequences with motif421.8
Percentage of Background Sequences with motif0.84%
Average Position of motif in Targets49.0 +/- 27.5bp
Average Position of motif in Background49.9 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGAGGACAGG
TRAGGTCA--
 C G T A T C A G C T G A C A T G T A C G C G T A A T G C C T G A A C T G C A T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGAGGACAGG
CAAAGGTCAG-
 A C G T C G T A T C A G C T G A C A T G T A C G C G T A A T G C C T G A A C T G C A T G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AGAGGACAGG
----CACAGN
 C G T A T C A G C T G A C A T G T A C G C G T A A T G C C T G A A C T G C A T G
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGAGGACAGG
AGRGGTCA--
 C G T A T C A G C T G A C A T G T A C G C G T A A T G C C T G A A C T G C A T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGAGGACAGG
CCAGGAACAG-
 A C G T C G T A T C A G C T G A C A T G T A C G C G T A A T G C C T G A A C T G C A T G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AGAGGACAGG---
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T C G T A T C A G C T G A C A T G T A C G C G T A A T G C C T G A A C T G C A T G A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGAGGACAGG--
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A C G T C G T A T C A G C T G A C A T G T A C G C G T A A T G C C T G A A C T G C A T G A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

NR2F1/MA0017.2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGAGGACAGG--
CAAAGGTCAAGGG
 A C G T C G T A T C A G C T G A C A T G T A C G C G T A A T G C C T G A A C T G C A T G A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGAGGACAGG---
TAGGGCAAAGGTCA
 A C G T C G T A T C A G C T G A C A T G T A C G C G T A A T G C C T G A A C T G C A T G A C G T A C G T A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGAGGACAGG
--TTGACAGG
 C G T A T C A G C T G A C A T G T A C G C G T A A T G C C T G A A C T G C A T G
A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G