Information for 4-CAGTCTCAAGCGC (Motif 7)

A T G C C G T A A C T G A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C A T C G A G T C
Reverse Opposite:
A C T G A T G C C T A G A G T C A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C G T A T C G
p-value:1e-11
log p-value:-2.610e+01
Information Content per bp:1.924
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.8 +/- 22.6bp
Average Position of motif in Background85.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0111.1_Nkx2-2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAGTCTCAAGCGC----
NANTTTCAAGTGGTTAN
 A T G C C G T A A C T G A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C A T C G A G T C A C G T A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGTCTCAAGCGC
----NTCAAGTGG
 A T G C C G T A A C T G A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C A T C G A G T C
A C G T A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

NKX2-3/MA0672.1/Jaspar

Match Rank:3
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CAGTCTCAAGCGC-
----NTCAAGTGGN
 A T G C C G T A A C T G A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAGTCTCAAGCGC-
----NTCAAGGTCA
 A T G C C G T A A C T G A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

PH0113.1_Nkx2-4/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CAGTCTCAAGCGC----
-AATTTCAAGTGGCTTN
 A T G C C G T A A C T G A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C A T C G A G T C A C G T A C G T A C G T A C G T
A C G T C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CAGTCTCAAGCGC
--GTCACATGAY-
 A T G C C G T A A C T G A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C A T C G A G T C
A C G T A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CAGTCTCAAGCGC-
----CTYRAGTGSY
 A T G C C G T A A C T G A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CAGTCTCAAGCGC-
----BTBRAGTGSN
 A T G C C G T A A C T G A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CAGTCTCAAGCGC----
-AANTTCAAGTGGCTTN
 A T G C C G T A A C T G A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C A T C G A G T C A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CAGTCTCAAGCGC-
----BTCAAGGTCA
 A T G C C G T A A C T G A C G T A G T C A C G T A G T C C G T A C G T A A C T G A G T C A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A