Information for 7-GCCATTGTTA (Motif 33)

A C T G A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A G T C C G T A C G T A A C G T A C T G A C T G A G T C
p-value:1e-8
log p-value:-1.920e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.6 +/- 21.5bp
Average Position of motif in Background55.0 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.84
Offset:1
Orientation:forward strand
Alignment:GCCATTGTTA
-CCATTGTTC
 A C T G A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T C G T A
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.84
Offset:1
Orientation:forward strand
Alignment:GCCATTGTTA-
-CCATTGTTYB
 A C T G A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T C G T A A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GCCATTGTTA
NCCATTGTTC
 A C T G A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T C G T A
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.82
Offset:1
Orientation:forward strand
Alignment:GCCATTGTTA
-CCTTTGTT-
 A C T G A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T C G T A
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GCCATTGTTA
NCCATTGTTY
 A C T G A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T C G T A
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GCCATTGTTA
-CCWTTGTY-
 A C T G A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T C G T A
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.79
Offset:3
Orientation:forward strand
Alignment:GCCATTGTTA
---ATTGTTA
 A C T G A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T C G T A
A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GCCATTGTTA-
-CCATTGTTNY
 A C T G A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T C G T A A C G T
A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---GCCATTGTTA---
ANNTCCATTGTTCNNN
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T C G T A A C G T A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GCCATTGTTA-
-CCWTTGTYYB
 A C T G A G T C A G T C C G T A A C G T A C G T A C T G A C G T A C G T C G T A A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G