Information for 1-GCAGCCAATCADG (Motif 3)

A T C G A T G C C T G A A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A C A T G T C A G
Reverse Opposite:
A G T C G T A C A C G T A C T G C G T A A C G T A C G T A C T G A C T G A G T C A G C T A T C G A T G C
p-value:1e-12
log p-value:-2.817e+01
Information Content per bp:1.863
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.1 +/- 25.1bp
Average Position of motif in Background63.7 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-GCAGCCAATCADG
ACTAGCCAATCA--
 A C G T A T C G A T G C C T G A A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A C A T G T C A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---GCAGCCAATCADG
AAATGGACCAATCAG-
 A C G T A C G T A C G T A T C G A T G C C T G A A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A C A T G T C A G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.80
Offset:2
Orientation:forward strand
Alignment:GCAGCCAATCADG
--AGCCAATCGG-
 A T C G A T G C C T G A A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A C A T G T C A G
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.78
Offset:4
Orientation:forward strand
Alignment:GCAGCCAATCADG
----CCAATCAA-
 A T C G A T G C C T G A A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A C A T G T C A G
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GCAGCCAATCADG----
CGACCCAATCAACGGTG
 A T C G A T G C C T G A A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A C A T G T C A G A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GCAGCCAATCADG
SCTGTCAVTCAV-
 A T C G A T G C C T G A A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A C A T G T C A G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCAGCCAATCADG-----
TGGACCAATCAGCACTCT
 A T C G A T G C C T G A A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A C A T G T C A G A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCAGCCAATCADG
NCTGTCAATCAN-
 A T C G A T G C C T G A A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A C A T G T C A G
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GCAGCCAATCADG
--AGCCACTCAAG
 A T C G A T G C C T G A A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A C A T G T C A G
A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCAGCCAATCADG--
SCAGYCADGCATGAC
 A T C G A T G C C T G A A C T G A G T C A G T C C G T A C G T A A C G T A G T C C G T A C A T G T C A G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C