Information for 12-GCAGGGAATCCCCTCC (Motif 28)

A C T G A G T C C G T A C T A G C T A G A C T G C G T A C G T A A C G T A G T C A G T C G T A C A G T C A C G T A G T C A T G C
Reverse Opposite:
A T C G A C T G C G T A A C T G A C T G A C T G A C T G T C G A A C G T A C G T A G T C A G T C A G T C A C G T A C T G A G T C
p-value:1e-8
log p-value:-2.023e+01
Information Content per bp:1.921
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.5 +/- 19.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFKB1/MA0105.4/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCAGGGAATCCCCTCC
-AGGGGATTCCCCT--
 A C T G A G T C C G T A C T A G C T A G A C T G C G T A C G T A A C G T A G T C A G T C G T A C A G T C A C G T A G T C A T G C
A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCAGGGAATCCCCTCC
-GGGGGAATCCCC---
 A C T G A G T C C G T A C T A G C T A G A C T G C G T A C G T A A C G T A G T C A G T C G T A C A G T C A C G T A G T C A T G C
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCAGGGAATCCCCTCC
-AGGGGATTCCCCT--
 A C T G A G T C C G T A C T A G C T A G A C T G C G T A C G T A A C G T A G T C A G T C G T A C A G T C A C G T A G T C A T G C
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCAGGGAATCCCCTCC
---GGAAATCCCC---
 A C T G A G T C C G T A C T A G C T A G A C T G C G T A C G T A A C G T A G T C A G T C G T A C A G T C A C G T A G T C A T G C
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCAGGGAATCCCCTCC
--GGGAAATCCCCN--
 A C T G A G T C C G T A C T A G C T A G A C T G C G T A C G T A A C G T A G T C A G T C G T A C A G T C A C G T A G T C A T G C
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGGAATCCCCTCC
GNNAGCTAATCCCCCN-
 A C G T A C T G A G T C C G T A C T A G C T A G A C T G C G T A C G T A A C G T A G T C A G T C G T A C A G T C A C G T A G T C A T G C
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T A C G T

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCAGGGAATCCCCTCC
---GGAAATTCCC---
 A C T G A G T C C G T A C T A G C T A G A C T G C G T A C G T A A C G T A G T C A G T C G T A C A G T C A C G T A G T C A T G C
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCAGGGAATCCCCTCC-
ATAGTTAATCCCCCNNA
 A C T G A G T C C G T A C T A G C T A G A C T G C G T A C G T A A C G T A G T C A G T C G T A C A G T C A C G T A G T C A T G C A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GCAGGGAATCCCCTCC
---GGAAATTCCC---
 A C T G A G T C C G T A C T A G C T A G A C T G C G T A C G T A A C G T A G T C A G T C G T A C A G T C A C G T A G T C A T G C
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCAGGGAATCCCCTCC-
NTAGTTAATCCCCTTAN
 A C T G A G T C C G T A C T A G C T A G A C T G C G T A C G T A A C G T A G T C A G T C G T A C A G T C A C G T A G T C A T G C A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A