Information for 8-GTCTTAGAGACAR (Motif 15)

A C T G A C G T A G T C A C G T A C G T C G T A C T A G C G T A C T A G C G T A A T G C C G T A C T G A
Reverse Opposite:
A G C T A C G T A T C G A C G T A G T C A C G T A G T C A C G T G T C A C G T A A C T G C G T A G T A C
p-value:1e-10
log p-value:-2.388e+01
Information Content per bp:1.874
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.0 +/- 24.0bp
Average Position of motif in Background35.1 +/- 14.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0187.1_Tcf7_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTCTTAGAGACAR
CCGTATTATAAACAA
 A C G T A C G T A C T G A C G T A G T C A C G T A C G T C G T A C T A G C G T A C T A G C G T A A T G C C G T A C T G A
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTCTTAGAGACAR
NTTTCTNAGAAA---
 A C G T A C G T A C T G A C G T A G T C A C G T A C G T C G T A C T A G C G T A C T A G C G T A A T G C C G T A C T G A
C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A A C G T A C G T A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTCTTAGAGACAR
TTTCCTAGAAAGCA
 A C G T A C T G A C G T A G T C A C G T A C G T C G T A C T A G C G T A C T A G C G T A A T G C C G T A C T G A
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A

PB0006.1_Bcl6b_1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GTCTTAGAGACAR
NNNATTCCTCGAAAGN-
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T C G T A C T A G C G T A C T A G C G T A A T G C C G T A C T G A
A T G C C T G A C G T A C G T A C G A T G C A T G T A C A G T C G C A T T G A C C T A G G C T A C G T A C T G A C T A G G C T A A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GTCTTAGAGACAR-----
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T C G T A C T A G C G T A C T A G C G T A A T G C C G T A C T G A A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTCTTAGAGACAR---
CTACTTGGATACGGAAT
 A C G T A C T G A C G T A G T C A C G T A C G T C G T A C T A G C G T A C T A G C G T A A T G C C G T A C T G A A C G T A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GTCTTAGAGACAR
-GGTTAGAGACCT
 A C T G A C G T A G T C A C G T A C G T C G T A C T A G C G T A C T A G C G T A A T G C C G T A C T G A
A C G T C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GTCTTAGAGACAR
-SCCTAGCAACAG
 A C T G A C G T A G T C A C G T A C G T C G T A C T A G C G T A C T A G C G T A A T G C C G T A C T G A
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

HOXD12/MA0873.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTCTTAGAGACAR
AGTCGTAAAAA---
 A C G T A C T G A C G T A G T C A C G T A C G T C G T A C T A G C G T A C T A G C G T A A T G C C G T A C T G A
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GTCTTAGAGACAR
GTCGTAAAAA---
 A C T G A C G T A G T C A C G T A C G T C G T A C T A G C G T A C T A G C G T A A T G C C G T A C T G A
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T A C G T