Information for 9-CGATTTAAGG (Motif 21)

G A T C A T C G C G T A A C G T A C G T A C G T G T C A C G T A C T A G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T T C G A C G T A C G T A C G A T T A G C C T A G
p-value:1e-8
log p-value:-1.878e+01
Information Content per bp:1.854
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif13.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets41.4 +/- 12.3bp
Average Position of motif in Background49.0 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0184.1_Tbp_2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CGATTTAAGG----
CCGATTTAAGCGACC
 A C G T G A T C A T C G C G T A A C G T A C G T A C G T G T C A C G T A C T A G A C T G A C G T A C G T A C G T A C G T
T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CGATTTAAGG--
TGATTTATGGCC
 G A T C A T C G C G T A A C G T A C G T A C G T G T C A C G T A C T A G A C T G A C G T A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CGATTTAAGG--
NTGATTTATGGCC
 A C G T G A T C A T C G C G T A A C G T A C G T A C G T G T C A C G T A C T A G A C T G A C G T A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CGATTTAAGG-
TGATTTATGGC
 G A T C A T C G C G T A A C G T A C G T A C G T G T C A C G T A C T A G A C T G A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGATTTAAGG--
TGATTTATGGCC
 G A T C A T C G C G T A A C G T A C G T A C G T G T C A C G T A C T A G A C T G A C G T A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

MF0008.1_MADS_class/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGATTTAAGG
CCATATATGG
 G A T C A T C G C G T A A C G T A C G T A C G T G T C A C G T A C T A G A C T G
G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CGATTTAAGG
CTATTTTTGG
 G A T C A T C G C G T A A C G T A C G T A C G T G T C A C G T A C T A G A C T G
A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGATTTAAGG-
GCTATTTTTGGM
 A C G T G A T C A T C G C G T A A C G T A C G T A C G T G T C A C G T A C T A G A C T G A C G T
C A T G A G T C G A C T C G T A C G A T G C A T G A C T G C A T C G A T C T A G C A T G T G A C

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGATTTAAGG
GNCTATAAAAGG
 A C G T A C G T G A T C A T C G C G T A A C G T A C G T A C G T G T C A C G T A C T A G A C T G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGATTTAAGG--
DGWTTTATGRCN
 G A T C A T C G C G T A A C G T A C G T A C G T G T C A C G T A C T A G A C T G A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C