Information for 5-GCTSTTAAMT (Motif 15)

A C T G A G T C G A C T A T C G A C G T G C A T G C T A C G T A T G C A A C G T
Reverse Opposite:
G T C A A C G T A C G T C G A T C G T A C G T A A T G C C T G A A C T G A G T C
p-value:1e-10
log p-value:-2.308e+01
Information Content per bp:1.757
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.47%
Number of Background Sequences with motif624.4
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets51.4 +/- 26.6bp
Average Position of motif in Background49.0 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rhox11/MA0629.1/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GCTSTTAAMT--
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G A C T A T C G A C G T G C A T G C T A C G T A T G C A A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GCTSTTAAMT--
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G A C T A T C G A C G T G C A T G C T A C G T A T G C A A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GCTSTTAAMT--
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G A C T A T C G A C G T G C A T G C T A C G T A T G C A A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCTSTTAAMT
NSCACTYVAV-
 A C G T A C T G A G T C G A C T A T C G A C G T G C A T G C T A C G T A T G C A A C G T
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCTSTTAAMT------
AGCTGTTAACTAGCCGT
 A C G T A C T G A G T C G A C T A T C G A C G T G C A T G C T A C G T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCTSTTAAMT
BRRCVGTTDN--
 A C G T A C G T A C T G A G T C G A C T A T C G A C G T G C A T G C T A C G T A T G C A A C G T
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCTSTTAAMT
NGCAATTAAA-
 A C G T A C T G A G T C G A C T A T C G A C G T G C A T G C T A C G T A T G C A A C G T
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

ISL2/MA0914.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCTSTTAAMT
GCACTTAA--
 A C T G A G T C G A C T A T C G A C G T G C A T G C T A C G T A T G C A A C G T
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCTSTTAAMT
-CTGTTTAC-
 A C T G A G T C G A C T A T C G A C G T G C A T G C T A C G T A T G C A A C G T
A C G T A G T C A C G T A C T G A G C T A C G T A C G T G T C A A G T C A C G T

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCTSTTAAMT
GGCVGTTR---
 A C G T A C T G A G T C G A C T A T C G A C G T G C A T G C T A C G T A T G C A A C G T
C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A A C G T A C G T A C G T