Information for 8-RTRTSCTTCTTAR (Motif 9)

C T G A A C G T C T G A A C G T A T G C A G T C A C G T A C G T A G T C C G A T A C G T C G T A C T A G
Reverse Opposite:
A G T C C G A T C G T A C G T A A C T G C G T A C G T A A C T G A T C G C G T A A G C T C G T A A G C T
p-value:1e-11
log p-value:-2.671e+01
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.3 +/- 31.7bp
Average Position of motif in Background26.2 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---RTRTSCTTCTTAR
AAGATATCCTT-----
 A C G T A C G T A C G T C T G A A C G T C T G A A C G T A T G C A G T C A C G T A C G T A G T C C G A T A C G T C G T A C T A G
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:forward strand
Alignment:RTRTSCTTCTTAR
----GCTTCC---
 C T G A A C G T C T G A A C G T A T G C A G T C A C G T A C G T A G T C C G A T A C G T C G T A C T A G
A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:RTRTSCTTCTTAR---
ACATGCTACCTAATAC
 C T G A A C G T C T G A A C G T A T G C A G T C A C G T A C G T A G T C C G A T A C G T C G T A C T A G A C G T A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

PB0155.1_Osr2_2/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RTRTSCTTCTTAR---
ACTTGCTACCTACACC
 C T G A A C G T C T G A A C G T A T G C A G T C A C G T A C G T A G T C C G A T A C G T C G T A C T A G A C G T A C G T A C G T
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C

PB0172.1_Sox1_2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:RTRTSCTTCTTAR--
CTATAATTGTTAGCG
 C T G A A C G T C T G A A C G T A T G C A G T C A C G T A C G T A G T C C G A T A C G T C G T A C T A G A C G T A C G T
G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G

PB0148.1_Mtf1_2/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RTRTSCTTCTTAR--
-NNTTTTTCTTATNT
 C T G A A C G T C T G A A C G T A T G C A G T C A C G T A C G T A G T C C G A T A C G T C G T A C T A G A C G T A C G T
A C G T A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RTRTSCTTCTTAR
CAGCTGTTTCCT--
 A C G T C T G A A C G T C T G A A C G T A T G C A G T C A C G T A C G T A G T C C G A T A C G T C G T A C T A G
G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:RTRTSCTTCTTAR
-----CTAATTAA
 C T G A A C G T C T G A A C G T A T G C A G T C A C G T A C G T A G T C C G A T A C G T C G T A C T A G
A C G T A C G T A C G T A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:9
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:RTRTSCTTCTTAR----
-----TTTCTNAGAAAN
 C T G A A C G T C T G A A C G T A T G C A G T C A C G T A C G T A G T C C G A T A C G T C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------RTRTSCTTCTTAR
NNNNTTGTGTGCTTNN---
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C G T C T G A A C G T A T G C A G T C A C G T A C G T A G T C C G A T A C G T C G T A C T A G
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T A C G T A C G T