Information for 16-AAAGTGGTTTGAT (Motif 25)

C G T A T C G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C T G C T G A A C G T
Reverse Opposite:
C G T A A G C T A G T C G T C A G T C A C G T A A T G C G A T C C G T A A G T C A C G T A G C T A C G T
p-value:1e-8
log p-value:-1.927e+01
Information Content per bp:1.834
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets63.8 +/- 26.4bp
Average Position of motif in Background46.5 +/- 20.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAAGTGGTTTGAT
TTRAGTGSYK----
 A C G T C G T A T C G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C T G C T G A A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AAAGTGGTTTGAT
TTAAGTGCTT----
 A C G T C G T A T C G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C T G C T G A A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AAAGTGGTTTGAT-
TACTAAGTACTTAAATG
 A C G T A C G T A C G T C G T A T C G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C T G C T G A A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AAAGTGGTTTGAT
TTAAGTGGT-----
 A C G T C G T A T C G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C T G C T G A A C G T
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AAAGTGGTTTGAT
NTCAAGTGGN-----
 A C G T A C G T C G T A T C G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C T G C T G A A C G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AAAGTGGTTTGAT-
TTCNAAGTACTTNNNNN
 A C G T A C G T A C G T C G T A T C G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C T G C T G A A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

NKX3-2/MA0122.2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AAAGTGGTTTGAT
TTAAGTGGN-----
 A C G T C G T A T C G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C T G C T G A A C G T
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AAAGTGGTTTGAT
---ATGGGGTGAT
 C G T A T C G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C T G C T G A A C G T
A C G T A C G T A C G T T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T

PH0116.1_Nkx2-9/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AAAGTGGTTTGAT-
TTTTAAGTACTTAAATT
 A C G T A C G T A C G T C G T A T C G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C T G C T G A A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AAAGTGGTTTGAT--
---GTGGCGTGACNG
 C G T A T C G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G