Information for 11-CTGTDTGAGTGGA (Motif 19)

A G T C A C G T A C T G C G A T C T G A C G A T A C T G C G T A A C T G A C G T A T C G A C T G C T G A
Reverse Opposite:
A G C T A G T C A T G C C G T A A G T C A C G T A G T C C G T A G A C T C G T A A G T C C G T A A C T G
p-value:1e-5
log p-value:-1.281e+01
Information Content per bp:1.870
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.4 +/- 28.2bp
Average Position of motif in Background49.0 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTGTDTGAGTGGA-
---CTTGAGTGGCT
 A G T C A C G T A C T G C G A T C T G A C G A T A C T G C G T A A C T G A C G T A T C G A C T G C T G A A C G T
A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PB0114.1_Egr1_2/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTGTDTGAGTGGA-----
--TGCGGAGTGGGACTGG
 A G T C A C G T A C T G C G A T C T G A C G A T A C T G C G T A A C T G A C G T A T C G A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CTGTDTGAGTGGA-
----TTGAGTGSTT
 A G T C A C G T A C T G C G A T C T G A C G A T A C T G C G T A A C T G A C G T A T C G A C T G C T G A A C G T
A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CTGTDTGAGTGGA-
----TTRAGTGSYK
 A G T C A C G T A C T G C G A T C T G A C G A T A C T G C G T A A C T G A C G T A T C G A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTGTDTGAGTGGA----
NTNNTTAAGTGGNTNAN
 A G T C A C G T A C T G C G A T C T G A C G A T A C T G C G T A A C T G A C G T A T C G A C T G C T G A A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTGTDTGAGTGGA----
NTNNTTAAGTGGTTANN
 A G T C A C G T A C T G C G A T C T G A C G A T A C T G C G T A A C T G A C G T A T C G A C T G C T G A A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

ZNF354C/MA0130.1/Jaspar

Match Rank:7
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:CTGTDTGAGTGGA-
--------GTGGAT
 A G T C A C G T A C T G C G A T C T G A C G A T A C T G C G T A A C T G A C G T A T C G A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTGTDTGAGTGGA
---BTBRAGTGSN
 A G T C A C G T A C T G C G A T C T G A C G A T A C T G C G T A A C T G A C G T A T C G A C T G C T G A
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CTGTDTGAGTGGA
NNNNGTTGATTGGGTCG-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G A T C T G A C G A T A C T G C G T A A C T G A C G T A T C G A C T G C T G A
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CTGTDTGAGTGGA
----TTAAGTGGT
 A G T C A C G T A C T G C G A T C T G A C G A T A C T G C G T A A C T G A C G T A T C G A C T G C T G A
A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T