Information for 12-GGAGACTGGC (Motif 22)

A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C T G A C G T A G T C A C G T A G T C G T A C
p-value:1e-6
log p-value:-1.392e+01
Information Content per bp:1.967
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif27.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets41.1 +/- 29.5bp
Average Position of motif in Background49.5 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GGAGACTGGC-
-----TTGGCA
 A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GGAGACTGGC---
----NTTGGCANN
 A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGAGACTGGC--
--GGTCTGGCAT
 A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGAGACTGGC---
-BTGABTGACAGS
 A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PB0203.1_Zfp691_2/Jaspar

Match Rank:5
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GGAGACTGGC-
NTNNNAGGAGTCTCNTN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGAGACTGGC----
--TGATTGGCTANN
 A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

POL002.1_INR/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGAGACTGGC
-NNNANTGA-
 A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C T G A C T G A G T C
A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGAGACTGGC
CCAGACAG--
 A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C T G A C T G A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGAGACTGGC
CCAGACRSVB
 A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C T G A C T G A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGAGACTGGC----
--TGTCTGDCACCT
 A C T G A C T G C G T A A C T G C G T A A G T C A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T