Information for 5-GCCAGAGGACAGA (Motif 6)

A C T G A G T C G T A C G T C A A C T G C G T A A C T G C T A G C G T A A G T C C G T A A C T G G T C A
Reverse Opposite:
A C G T A G T C C G A T A C T G A C G T A G T C A G T C A C G T A G T C A C G T A C T G A C T G A G T C
p-value:1e-13
log p-value:-3.023e+01
Information Content per bp:1.903
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 29.5bp
Average Position of motif in Background17.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCCAGAGGACAGA
TCACCTCTGGGCAG-
 A C G T A C G T A C T G A G T C G T A C G T C A A C T G C G T A A C T G C T A G C G T A A G T C C G T A A C T G G T C A
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCCAGAGGACAGA
--CAAAGGTCAG-
 A C T G A G T C G T A C G T C A A C T G C G T A A C T G C T A G C G T A A G T C C G T A A C T G G T C A
A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCCAGAGGACAGA
CCGCCCAAGGGCAG-
 A C G T A C G T A C T G A G T C G T A C G T C A A C T G C G T A A C T G C T A G C G T A A G T C C G T A A C T G G T C A
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCCAGAGGACAGA
GCCTCAGGGCAT-
 A C T G A G T C G T A C G T C A A C T G C G T A A C T G C T A G C G T A A G T C C G T A A C T G G T C A
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCCAGAGGACAGA
TAGGGCAAAGGTCA--
 A C G T A C G T A C G T A C T G A G T C G T A C G T C A A C T G C G T A A C T G C T A G C G T A A G T C C G T A A C T G G T C A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCCAGAGGACAGA
---TRAGGTCA--
 A C T G A G T C G T A C G T C A A C T G C G T A A C T G C T A G C G T A A G T C C G T A A C T G G T C A
A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCCAGAGGACAGA
GTAGGGCAAAGGTCA--
 A C G T A C G T A C G T A C G T A C T G A G T C G T A C G T C A A C T G C G T A A C T G C T A G C G T A A G T C C G T A A C T G G T C A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCCAGAGGACAGA
TGGGGCAAAGGTCA--
 A C G T A C G T A C G T A C T G A G T C G T A C G T C A A C T G C G T A A C T G C T A G C G T A A G T C C G T A A C T G G T C A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCCAGAGGACAGA
--CCAGGAACAG-
 A C T G A G T C G T A C G T C A A C T G C G T A A C T G C T A G C G T A A G T C C G T A A C T G G T C A
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCCAGAGGACAGA
GAGGTCAAAGGTCA--
 A C G T A C G T A C G T A C T G A G T C G T A C G T C A A C T G C G T A A C T G C T A G C G T A A G T C C G T A A C T G G T C A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T A C G T