Information for 12-CGTGACCTCT (Motif 25)

A G T C T C A G A C G T A T C G C G T A A G T C T A G C G A C T A G T C A C G T
Reverse Opposite:
G T C A C T A G C T G A A C T G A C T G A C G T A T G C C G T A A G T C A C T G
p-value:1e-6
log p-value:-1.568e+01
Information Content per bp:1.807
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif29.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets47.8 +/- 25.9bp
Average Position of motif in Background56.2 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTCT
--TGACCYCT
 A G T C T C A G A C G T A T C G C G T A A G T C T A G C G A C T A G T C A C G T
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---CGTGACCTCT----
TGTCGTGACCCCTTAAT
 A C G T A C G T A C G T A G T C T C A G A C G T A T C G C G T A A G T C T A G C G A C T A G T C A C G T A C G T A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---CGTGACCTCT----
NNNNTTGACCCCTNNNN
 A C G T A C G T A C G T A G T C T C A G A C G T A T C G C G T A A G T C T A G C G A C T A G T C A C G T A C G T A C G T A C G T A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

NR2F1/MA0017.2/Jaspar

Match Rank:4
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--CGTGACCTCT-
CNNTTGACCTTTG
 A C G T A C G T A G T C T C A G A C G T A T C G C G T A A G T C T A G C G A C T A G T C A C G T A C G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--CGTGACCTCT----
NNNNTGACCTTTNNNN
 A C G T A C G T A G T C T C A G A C G T A T C G C G T A A G T C T A G C G A C T A G T C A C G T A C G T A C G T A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTCT
--TGACCTYA
 A G T C T C A G A C G T A T C G C G T A A G T C T A G C G A C T A G T C A C G T
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--CGTGACCTCT----
NNNGTGACCTTTGNNN
 A C G T A C G T A G T C T C A G A C G T A T C G C G T A A G T C T A G C G A C T A G T C A C G T A C G T A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

Pax2/MA0067.1/Jaspar

Match Rank:8
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CGTGACCTCT
NCGTGACN---
 A C G T A G T C T C A G A C G T A T C G C G T A A G T C T A G C G A C T A G T C A C G T
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTCT
--TGACCT--
 A G T C T C A G A C G T A T C G C G T A A G T C T A G C G A C T A G T C A C G T
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CGTGACCTCT
-GTGACCTT-
 A G T C T C A G A C G T A T C G C G T A A G T C T A G C G A C T A G T C A C G T
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T