Information for 4-MKGWCCTRGTGYTTSW (Motif 8)

T G A C A C G T A C T G C G T A A G T C A G T C A C G T C T A G A C T G A G C T A C T G A G C T A C G T A C G T A T C G C G T A
Reverse Opposite:
C G A T A T G C C G T A G T C A C T G A A G T C C T G A G T A C A G T C C G T A A C T G A C T G C G A T A G T C G T C A A C G T
p-value:1e-11
log p-value:-2.561e+01
Information Content per bp:1.812
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.6 +/- 19.0bp
Average Position of motif in Background81.4 +/- 1.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:MKGWCCTRGTGYTTSW
-TGACCT---------
 T G A C A C G T A C T G C G T A A G T C A G T C A C G T C T A G A C T G A G C T A C T G A G C T A C G T A C G T A T C G C G T A
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-MKGWCCTRGTGYTTSW
GCTGACCTTGAACTN--
 A C G T T G A C A C G T A C T G C G T A A G T C A G T C A C G T C T A G A C T G A G C T A C T G A G C T A C G T A C G T A T C G C G T A
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-MKGWCCTRGTGYTTSW
BNTGDCCTTG-------
 A C G T T G A C A C G T A C T G C G T A A G T C A G T C A C G T C T A G A C T G A G C T A C T G A G C T A C G T A C G T A T C G C G T A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:MKGWCCTRGTGYTTSW
-TGACCTYA-------
 T G A C A C G T A C T G C G T A A G T C A G T C A C G T C T A G A C T G A G C T A C T G A G C T A C G T A C G T A T C G C G T A
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:MKGWCCTRGTGYTTSW
-CCACCTGTTGCAT--
 T G A C A C G T A C T G C G T A A G T C A G T C A C G T C T A G A C T G A G C T A C T G A G C T A C G T A C G T A T C G C G T A
A C G T T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:MKGWCCTRGTGYTTSW
GAGCCCTTGTCCCTAA
 T G A C A C G T A C T G C G T A A G T C A G T C A C G T C T A G A C T G A G C T A C T G A G C T A C G T A C G T A T C G C G T A
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:MKGWCCTRGTGYTTSW
-TGACCTTGAT-----
 T G A C A C G T A C T G C G T A A G T C A G T C A C G T C T A G A C T G A G C T A C T G A G C T A C G T A C G T A T C G C G T A
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:MKGWCCTRGTGYTTSW
TTGACCTANTTATN--
 T G A C A C G T A C T G C G T A A G T C A G T C A C G T C T A G A C T G A G C T A C T G A G C T A C G T A C G T A T C G C G T A
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:MKGWCCTRGTGYTTSW
-TGACCTARTT-----
 T G A C A C G T A C T G C G T A A G T C A G T C A C G T C T A G A C T G A G C T A C T G A G C T A C G T A C G T A T C G C G T A
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:MKGWCCTRGTGYTTSW
NTGCCCANNGGTNA--
 T G A C A C G T A C T G C G T A A G T C A G T C A C G T C T A G A C T G A G C T A C T G A G C T A C G T A C G T A T C G C G T A
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T A C G T