Information for 13-ATCAAATTTG (Motif 43)

C G T A A C G T A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C T G C G T A A C G T
p-value:1e-3
log p-value:-8.967e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.5 +/- 27.2bp
Average Position of motif in Background55.5 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ATCAAATTTG
ATTAAA----
 C G T A A C G T A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C T G
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T

PB0105.1_Arid3a_2/Jaspar

Match Rank:2
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------ATCAAATTTG
ACCCGTATCAAATTT-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C T G
G T C A G T A C T G A C T A G C T C A G A G C T T C G A A G C T T A G C C T G A C G T A T C G A C G A T G A C T C A G T A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATCAAATTTG
TAATYNRATTAR
 A C G T A C G T C G T A A C G T A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C T G
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

PH0134.1_Pbx1/Jaspar

Match Rank:4
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------ATCAAATTTG-
TCACCCATCAATAAACA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C T G A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ATCAAATTTG
GKVTCADRTTWC
 A C G T A C G T C G T A A C G T A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C T G
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

PROP1/MA0715.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATCAAATTTG
TAATTTAATTA-
 A C G T A C G T C G T A A C G T A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C T G
G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATCAAATTTG-
TTGAATGAAATTCGA
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C T G A C G T
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------ATCAAATTTG-
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C T G A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATCAAATTTG
NTAATBNAATTA-
 A C G T A C G T A C G T C G T A A C G T A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C T G
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A A C G T

PAX4/MA0068.2/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ATCAAATTTG
--CTAATTAG
 C G T A A C G T A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C T G
A C G T A C G T A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G