Information for 10-GTCACGGCTA (Motif 41)

A C T G A G C T A T G C T G C A G T A C C T A G C A T G A T G C C A G T G C T A
Reverse Opposite:
C G A T G T C A T A C G G T A C G A T C C A T G A C G T T A C G T C G A T G A C
p-value:1e-6
log p-value:-1.389e+01
Information Content per bp:1.648
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif5.36%
Number of Background Sequences with motif1126.8
Percentage of Background Sequences with motif2.30%
Average Position of motif in Targets55.8 +/- 26.9bp
Average Position of motif in Background50.5 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GTCACGGCTA
AGTCACGC---
 A C G T A C T G A G C T A T G C T G C A G T A C C T A G C A T G A T G C C A G T G C T A
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GTCACGGCTA--
NNGGCCACGCCTTTN
 A C G T A C G T A C G T A C T G A G C T A T G C T G C A G T A C C T A G C A T G A T G C C A G T G C T A A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Arntl/MA0603.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTCACGGCTA
GGTCACGTGC-
 A C G T A C T G A G C T A T G C T G C A G T A C C T A G C A T G A T G C C A G T G C T A
C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C A C G T

Mitf/MA0620.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTCACGGCTA
GGTCACGTGG-
 A C G T A C T G A G C T A T G C T G C A G T A C C T A G C A T G A T G C C A G T G C T A
C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTCACGGCTA
AGGTCAAGGTCA
 A C G T A C G T A C T G A G C T A T G C T G C A G T A C C T A G C A T G A T G C C A G T G C T A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

TBX15/MA0803.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTCACGGCTA
-TCACACCT-
 A C T G A G C T A T G C T G C A G T A C C T A G C A T G A T G C C A G T G C T A
A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTCACGGCTA----
GTCACGCTCNCTGA
 A C T G A G C T A T G C T G C A G T A C C T A G C A T G A T G C C A G T G C T A A C G T A C G T A C G T A C G T
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GTCACGGCTA
CCTGTCAA-----
 A C G T A C G T A C G T A C T G A G C T A T G C T G C A G T A C C T A G C A T G A T G C C A G T G C T A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GTCACGGCTA
-TCACACCT-
 A C T G A G C T A T G C T G C A G T A C C T A G C A T G A T G C C A G T G C T A
A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T A C G T

Creb3l2/MA0608.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTCACGGCTA
GCCACGTGT-
 A C T G A G C T A T G C T G C A G T A C C T A G C A T G A T G C C A G T G C T A
A C T G G T A C A T G C C G T A A G T C A C T G A C G T A T C G C A G T A C G T