Information for 17-CACATTAACACCAGMT (Motif 37)

A G T C C T G A G T A C G T C A A G C T A G C T C T G A C G T A G T A C C G T A G A T C A G T C C G T A A T C G G T A C A C G T
Reverse Opposite:
T C G A C A T G A T G C C G A T A C T G C A T G C G A T A C T G C G A T G A C T C T G A C T G A C A G T A C T G A G C T C T A G
p-value:1e-7
log p-value:-1.707e+01
Information Content per bp:1.714
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.2 +/- 30.2bp
Average Position of motif in Background51.7 +/- 47.1bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CACATTAACACCAGMT
---ATTAACACCT---
 A G T C C T G A G T A C G T C A A G C T A G C T C T G A C G T A G T A C C G T A G A T C A G T C C G T A A T C G G T A C A C G T
A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CACATTAACACCAGMT--
YTAATTRAWWCCAGATGT
 A G T C C T G A G T A C G T C A A G C T A G C T C T G A C G T A G T A C C G T A G A T C A G T C C G T A A T C G G T A C A C G T A C G T A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

TBX2/MA0688.1/Jaspar

Match Rank:3
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CACATTAACACCAGMT
---TTTCACACCTN--
 A G T C C T G A G T A C G T C A A G C T A G C T C T G A C G T A G T A C C G T A G A T C A G T C C G T A A T C G G T A C A C G T
A C G T A C G T A C G T G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T A C G T A C G T

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CACATTAACACCAGMT---
VCAKCTGGNNNCCAGMTGBN
 A C G T A G T C C T G A G T A C G T C A A G C T A G C T C T G A C G T A G T A C C G T A G A T C A G T C C G T A A T C G G T A C A C G T A C G T A C G T A C G T
T G A C G T A C C G T A A C T G T G A C C G A T A C T G A T C G A G C T T A C G T C G A T A G C G T A C C G T A A T C G T G A C G C A T A C T G A C T G A T G C

TBX5/MA0807.1/Jaspar

Match Rank:5
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:CACATTAACACCAGMT
-----TCACACCT---
 A G T C C T G A G T A C G T C A A G C T A G C T C T G A C G T A G T A C C G T A G A T C A G T C C G T A A T C G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C T C G A A G T C T G C A G T A C A G T C G A C T A C G T A C G T A C G T

TBX4/MA0806.1/Jaspar

Match Rank:6
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:CACATTAACACCAGMT
-----TCACACCT---
 A G T C C T G A G T A C G T C A A G C T A G C T C T G A C G T A G T A C C G T A G A T C A G T C C G T A A T C G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A A G T C T C G A A T G C A G T C G A C T A C G T A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CACATTAACACCAGMT
---TTTCACACCT---
 A G T C C T G A G T A C G T C A A G C T A G C T C T G A C G T A G T A C C G T A G A T C A G T C C G T A A T C G G T A C A C G T
A C G T A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T A C G T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CACATTAACACCAGMT
---KTTCACACCT---
 A G T C C T G A G T A C G T C A A G C T A G C T C T G A C G T A G T A C C G T A G A T C A G T C C G T A A T C G G T A C A C G T
A C G T A C G T A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T A C G T A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CACATTAACACCAGMT-
TCNCTTTACAGCGNNNT
 A G T C C T G A G T A C G T C A A G C T A G C T C T G A C G T A G T A C C G T A G A T C A G T C C G T A A T C G G T A C A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

Rhox11/MA0629.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CACATTAACACCAGMT-
TCNNTTTACAGCGNNNT
 A G T C C T G A G T A C G T C A A G C T A G C T C T G A C G T A G T A C C G T A G A T C A G T C C G T A A T C G G T A C A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T