Information for 16-TTTAGTCTTCAAAAAT (Motif 32)

A C G T A C G T C G A T C G T A A C T G A C G T A G T C A C G T A C G T A G T C C G T A C G T A C T G A C G T A C T G A A C G T
Reverse Opposite:
G T C A A G C T C G A T A G C T A C G T A C G T A C T G C G T A C G T A C T A G C G T A A G T C A C G T C G T A C G T A G T C A
p-value:1e-8
log p-value:-1.983e+01
Information Content per bp:1.914
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.5 +/- 21.1bp
Average Position of motif in Background21.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TTTAGTCTTCAAAAAT
---CGGTTTCAAA---
 A C G T A C G T C G A T C G T A A C T G A C G T A G T C A C G T A C G T A G T C C G T A C G T A C T G A C G T A C T G A A C G T
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TTTAGTCTTCAAAAAT
TAAAGTCGTAAAACAT
 A C G T A C G T C G A T C G T A A C T G A C G T A G T C A C G T A C G T A G T C C G T A C G T A C T G A C G T A C T G A A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TTTAGTCTTCAAAAAT
TAAAGTCGTAAAACGT
 A C G T A C G T C G A T C G T A A C T G A C G T A G T C A C G T A C G T A G T C C G T A C G T A C T G A C G T A C T G A A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TTTAGTCTTCAAAAAT
TAAAGTCGTAAAATAG
 A C G T A C G T C G A T C G T A A C T G A C G T A G T C A C G T A C G T A G T C C G T A C G T A C T G A C G T A C T G A A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

HOXD12/MA0873.1/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TTTAGTCTTCAAAAAT
---AGTCGTAAAAA--
 A C G T A C G T C G A T C G T A A C T G A C G T A G T C A C G T A C G T A G T C C G T A C G T A C T G A C G T A C T G A A C G T
A C G T A C G T A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TTTAGTCTTCAAAAAT
-----NATTCAAAT--
 A C G T A C G T C G A T C G T A A C T G A C G T A G T C A C G T A C G T A G T C C G T A C G T A C T G A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TTTAGTCTTCAAAAAT-
TAAGGTCGTAAAATCCT
 A C G T A C G T C G A T C G T A A C T G A C G T A G T C A C G T A C G T A G T C C G T A C G T A C T G A C G T A C T G A A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

HOXC12/MA0906.1/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TTTAGTCTTCAAAAAT
---GGTCGTAAAAA--
 A C G T A C G T C G A T C G T A A C T G A C G T A G T C A C G T A C G T A G T C C G T A C G T A C T G A C G T A C T G A A C G T
A C G T A C G T A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TTTAGTCTTCAAAAAT
----GTCGTAAAAA--
 A C G T A C G T C G A T C G T A A C T G A C G T A G T C A C G T A C G T A G T C C G T A C G T A C T G A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TTTAGTCTTCAAAAAT
----GTCGTAAAAT--
 A C G T A C G T C G A T C G T A A C T G A C G T A G T C A C G T A C G T A G T C C G T A C G T A C T G A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T