Information for 2-CAGGGAGCCTCRCRGG (Motif 3)

A G T C C G T A A C T G C T A G A C T G T C G A C T A G A G T C A T G C A G C T G A T C C T G A T A G C C T G A A C T G A T C G
Reverse Opposite:
A T G C A G T C A G C T A T C G A G C T C A T G T C G A T A C G C T A G A G T C A G C T A G T C A G T C G T A C A C G T C T A G
p-value:1e-12
log p-value:-2.988e+01
Information Content per bp:1.731
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif15.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets54.7 +/- 27.9bp
Average Position of motif in Background57.2 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGGGAGCCTCRCRGG
TCAGNGAGCGTGAC---
 A C G T A G T C C G T A A C T G C T A G A C T G T C G A C T A G A G T C A T G C A G C T G A T C C T G A T A G C C T G A A C T G A T C G
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CAGGGAGCCTCRCRGG
--CGGAGC--------
 A G T C C G T A A C T G C T A G A C T G T C G A C T A G A G T C A T G C A G C T G A T C C T G A T A G C C T G A A C T G A T C G
A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CAGGGAGCCTCRCRGG
GCCASCAGGGGGCGCYVNNG-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C T A G A C T G T C G A C T A G A G T C A T G C A G C T G A T C C T G A T A G C C T G A A C T G A T C G
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G A C G T

INSM1/MA0155.1/Jaspar

Match Rank:4
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CAGGGAGCCTCRCRGG
TGTCAGGGGGCG-------
 A C G T A C G T A C G T A G T C C G T A A C T G C T A G A C T G T C G A C T A G A G T C A T G C A G C T G A T C C T G A T A G C C T G A A C T G A T C G
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CAGGGAGCCTCRCRGG-
---GGGGCCCAAGGGGG
 A G T C C G T A A C T G C T A G A C T G T C G A C T A G A G T C A T G C A G C T G A T C C T G A T A G C C T G A A C T G A T C G A C G T
A C G T A C G T A C G T A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

PB0052.1_Plagl1_1/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CAGGGAGCCTCRCRGG
NNNGGGGCGCCCCCNN--
 A C G T A C G T A G T C C G T A A C T G C T A G A C T G T C G A C T A G A G T C A T G C A G C T G A T C C T G A T A G C C T G A A C T G A T C G
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CAGGGAGCCTCRCRGG
NNNAAGGGGGCGGGNNN--
 A C G T A C G T A C G T A G T C C G T A A C T G C T A G A C T G T C G A C T A G A G T C A T G C A G C T G A T C C T G A T A G C C T G A A C T G A T C G
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C A C G T A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:8
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CAGGGAGCCTCRCRGG
NRRGGGTCTT------
 A G T C C G T A A C T G C T A G A C T G T C G A C T A G A G T C A T G C A G C T G A T C C T G A T A G C C T G A A C T G A T C G
A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CAGGGAGCCTCRCRGG
ACAGGAAGTG-------
 A C G T A G T C C G T A A C T G C T A G A C T G T C G A C T A G A G T C A T G C A G C T G A T C C T G A T A G C C T G A A C T G A T C G
T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CAGGGAGCCTCRCRGG
-AGCGCGCC-------
 A G T C C G T A A C T G C T A G A C T G T C G A C T A G A G T C A T G C A G C T G A T C C T G A T A G C C T G A A C T G A T C G
A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T