Information for 13-AGGCAATARAAAAACA (Motif 25)

C G T A C T A G A T C G T A G C C G T A T C G A C G A T C T G A C T A G C G T A C G T A C G T A T C G A C G T A G A T C C G T A
Reverse Opposite:
A C G T C T A G A C G T A G C T C G A T A C G T A C G T A G T C A G C T C G T A A G C T C G A T A T C G A T G C A G T C A C G T
p-value:1e-8
log p-value:-2.014e+01
Information Content per bp:1.789
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.8 +/- 25.2bp
Average Position of motif in Background60.4 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0182.1_Srf_2/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGGCAATARAAAAACA---
--GTTAAAAAAAAAAATTA
 C G T A C T A G A T C G T A G C C G T A T C G A C G A T C T G A C T A G C G T A C G T A C G T A T C G A C G T A G A T C C G T A A C G T A C G T A C G T
A C G T A C G T T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGCAATARAAAAACA
AAGCCATAAAA-----
 C G T A C T A G A T C G T A G C C G T A T C G A C G A T C T G A C T A G C G T A C G T A C G T A T C G A C G T A G A T C C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGCAATARAAAAACA
AACCCAATAAAATTCG-
 A C G T C G T A C T A G A T C G T A G C C G T A T C G A C G A T C T G A C T A G C G T A C G T A C G T A T C G A C G T A G A T C C G T A
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:4
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:AGGCAATARAAAAACA---
-------AAACAAACATTC
 C G T A C T A G A T C G T A G C C G T A T C G A C G A T C T G A C T A G C G T A C G T A C G T A T C G A C G T A G A T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGCAATARAAAAACA
AATGCAATAAAATTTAT
 A C G T C G T A C T A G A T C G T A G C C G T A T C G A C G A T C T G A C T A G C G T A C G T A C G T A T C G A C G T A G A T C C G T A
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

Hoxd9/MA0913.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGGCAATARAAAAACA
--GCAATAAAAA----
 C G T A C T A G A T C G T A G C C G T A T C G A C G A T C T G A C T A G C G T A C G T A C G T A T C G A C G T A G A T C C G T A
A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGGCAATARAAAAACA
-GGTAATAAAAA----
 C G T A C T A G A T C G T A G C C G T A T C G A C G A T C T G A C T A G C G T A C G T A C G T A T C G A C G T A G A T C C G T A
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGGCAATARAAAAACA
--CCAATAAAAA----
 C G T A C T A G A T C G T A G C C G T A T C G A C G A T C T G A C T A G C G T A C G T A C G T A T C G A C G T A G A T C C G T A
A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGCAATARAAAAACA
ACGGCCATAAAATTAAT
 A C G T C G T A C T A G A T C G T A G C C G T A T C G A C G A T C T G A C T A G C G T A C G T A C G T A T C G A C G T A G A T C C G T A
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGGCAATARAAAAACA
--CCAATAAAAA----
 C G T A C T A G A T C G T A G C C G T A T C G A C G A T C T G A C T A G C G T A C G T A C G T A T C G A C G T A G A T C C G T A
A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T