Information for 13-CYMACCTTARTKG (Motif 23)

A G T C G A T C G T C A C G T A A G T C A G T C A C G T A C G T C G T A T C G A A C G T A C G T A T C G
Reverse Opposite:
A T G C T G C A C G T A A G C T A C G T C G T A C G T A A C T G C T A G A C G T A C G T C T A G A C T G
p-value:1e-9
log p-value:-2.088e+01
Information Content per bp:1.833
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.3 +/- 19.2bp
Average Position of motif in Background52.4 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CYMACCTTARTKG
NNACTTACCTN-----
 A C G T A C G T A C G T A G T C G A T C G T C A C G T A A G T C A G T C A C G T A C G T C G T A T C G A A C G T A C G T A T C G
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T A C G T A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CYMACCTTARTKG-----
----CCTTAATNGNTTTT
 A G T C G A T C G T C A C G T A A G T C A G T C A C G T A C G T C G T A T C G A A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CYMACCTTARTKG-
------NTAATTGN
 A G T C G A T C G T C A C G T A A G T C A G T C A C G T A C G T C G T A T C G A A C G T A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

NKX6-2/MA0675.1/Jaspar

Match Rank:4
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CYMACCTTARTKG-
------TTAATTAN
 A G T C G A T C G T C A C G T A A G T C A G T C A C G T A C G T C G T A T C G A A C G T A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

BSX/MA0876.1/Jaspar

Match Rank:5
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CYMACCTTARTKG-
------NTAATTGG
 A G T C G A T C G T C A C G T A A G T C A G T C A C G T A C G T C G T A T C G A A C G T A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

MSX2/MA0708.1/Jaspar

Match Rank:6
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CYMACCTTARTKG-
------NTAATTGG
 A G T C G A T C G T C A C G T A A G T C A G T C A C G T A C G T C G T A T C G A A C G T A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CYMACCTTARTKG-
------CTAATKGV
 A G T C G A T C G T C A C G T A A G T C A G T C A C G T A C G T C G T A T C G A A C G T A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:8
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CYMACCTTARTKG
-----GKTAATGR
 A G T C G A T C G T C A C G T A A G T C A G T C A C G T A C G T C G T A T C G A A C G T A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

Hmx1/MA0896.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CYMACCTTARTKG-----
-ANNCATTAATTGCTNGN
 A G T C G A T C G T C A C G T A A G T C A G T C A C G T A C G T C G T A T C G A A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CYMACCTTARTKG-----
-ANNCATTAATTGCTNGN
 A G T C G A T C G T C A C G T A A G T C A G T C A C G T A C G T C G T A T C G A A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T