Information for 8-MAGKGCYATTMAA (Motif 16)

G T C A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C G T A C G T G T A C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G C G T A C G T A A C G T C T A G A C T G G T A C G T A C G T A C A C G T A C G T
p-value:1e-9
log p-value:-2.215e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.0 +/- 28.7bp
Average Position of motif in Background73.0 +/- 11.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:MAGKGCYATTMAA
---NGCAATTAAA
 G T C A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C G T A C G T G T A C C G T A C G T A
A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:MAGKGCYATTMAA-----
-ACGGCCATAAAATTAAT
 G T C A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C G T A C G T G T A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:MAGKGCYATTMAA----
-AGAGCCATAAAATTCG
 G T C A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C G T A C G T G T A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:MAGKGCYATTMAA
---GGCCATTAAC
 G T C A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C G T A C G T G T A C C G T A C G T A
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:MAGKGCYATTMAA-
----GCAATAAAAA
 G T C A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C G T A C G T G T A C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.63
Offset:7
Orientation:forward strand
Alignment:MAGKGCYATTMAA
-------ATTAAA
 G T C A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C G T A C G T G T A C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:MAGKGCYATTMAA-
---GGTAATAAAAA
 G T C A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C G T A C G T G T A C C G T A C G T A A C G T
A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:MAGKGCYATTMAA-
AAAAACCATTAAGG
 G T C A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C G T A C G T G T A C C G T A C G T A A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:MAGKGCYATTMAA
--AAGCCATAAAA
 G T C A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C G T A C G T G T A C C G T A C G T A
A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

LIN54/MA0619.1/Jaspar

Match Rank:10
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:MAGKGCYATTMAA--
------NATTCAAAT
 G T C A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C G T A C G T G T A C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T