Information for 9-YTGCCARRAAKTC (Motif 12)

A G T C A C G T A C T G A G T C A G T C C G T A C T A G T C G A C G T A C G T A A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A G T C A A C G T A C G T A G C T G A T C A C G T A C T G A C T G A G T C C G T A C T A G
p-value:1e-11
log p-value:-2.662e+01
Information Content per bp:1.874
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.5 +/- 27.0bp
Average Position of motif in Background40.4 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:YTGCCARRAAKTC
TTGCCAAG-----
 A G T C A C G T A C T G A G T C A G T C C G T A C T A G T C G A C G T A C G T A A C G T A C G T A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-YTGCCARRAAKTC
CGTGCCAAG-----
 A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G T C G A C G T A C G T A A C G T A C G T A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-YTGCCARRAAKTC
GGTGCCAAGT----
 A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G T C G A C G T A C G T A A C G T A C G T A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:YTGCCARRAAKTC
-TGCCAA------
 A G T C A C G T A C T G A G T C A G T C C G T A C T A G T C G A C G T A C G T A A C G T A C G T A G T C
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-YTGCCARRAAKTC
NCTTCCNGGAAGNN
 A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G T C G A C G T A C G T A A C G T A C G T A G T C
T C A G A G T C G A C T A C G T G T A C A G T C C G A T C T A G C A T G G T C A C T G A T C A G A G C T T A C G

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:YTGCCARRAAKTC
CTGCCCGCA----
 A G T C A C G T A C T G A G T C A G T C C G T A C T A G T C G A C G T A C G T A A C G T A C G T A G T C
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T

Stat4/MA0518.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:YTGCCARRAAKTC-
TTTCCAGGAAATGG
 A G T C A C G T A C T G A G T C A G T C C G T A C T A G T C G A C G T A C G T A A C G T A C G T A G T C A C G T
A G C T G C A T C A G T T G A C G A T C C T G A C T A G C T A G C G T A C G T A T C G A A G C T T A C G T C A G

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:YTGCCARRAAKTC
CTTCCNGGAA---
 A G T C A C G T A C T G A G T C A G T C C G T A C T A G T C G A C G T A C G T A A C G T A C G T A G T C
A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A A C G T A C G T A C G T

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:YTGCCARRAAKTC
TTTCCNGGAAAN-
 A G T C A C G T A C T G A G T C A G T C C G T A C T A G T C G A C G T A C G T A A C G T A C G T A G T C
A G C T A C G T A C G T G T A C G A T C G C A T C T A G C A T G G T C A C G T A T C G A A G T C A C G T

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-YTGCCARRAAKTC
ATTTCCNGGAAATN
 A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G T C G A C G T A C G T A A C G T A C G T A G T C
C T G A G A C T A C G T A C G T G T A C G A T C G C T A C T A G C A T G C G T A C G T A C T G A G A C T T A C G