Information for 20-AACCATCATMTGC (Motif 41)

C G T A C T G A A T G C A T G C C G T A C A G T A G T C G T C A A G C T G T A C G A C T A T C G G A T C
Reverse Opposite:
C A T G A T G C C G T A C A T G C T G A C A G T A C T G G C T A G C A T A T C G A T C G A G C T A C G T
p-value:1e-6
log p-value:-1.394e+01
Information Content per bp:1.712
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif135.5
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets49.4 +/- 23.1bp
Average Position of motif in Background52.0 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AACCATCATMTGC
GYCATCMATCAT----
 A C G T A C G T A C G T C G T A C T G A A T G C A T G C C G T A C A G T A G T C G T C A A G C T G T A C G A C T A T C G G A T C
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T A C G T

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AACCATCATMTGC
AACCGANA-----
 C G T A C T G A A T G C A T G C C G T A C A G T A G T C G T C A A G C T G T A C G A C T A T C G G A T C
C G T A C G T A T A G C A G T C C T A G G C T A G T A C G C T A A C G T A C G T A C G T A C G T A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AACCATCATMTGC-
----ACCATATGTT
 C G T A C T G A A T G C A T G C C G T A C A G T A G T C G T C A A G C T G T A C G A C T A T C G G A T C A C G T
A C G T A C G T A C G T A C G T T C G A T G A C G T A C C T G A A G C T G T C A G A C T A C T G A G C T G A C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AACCATCATMTGC-----
-CTCAGCAGCTGCTACTG
 C G T A C T G A A T G C A T G C C G T A C A G T A G T C G T C A A G C T G T A C G A C T A T C G G A T C A C G T A C G T A C G T A C G T A C G T
A C G T A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AACCATCATMTGC
AAACMATTAN----
 A C G T C G T A C T G A A T G C A T G C C G T A C A G T A G T C G T C A A G C T G T A C G A C T A T C G G A T C
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T A C G T A C G T

Atoh1/MA0461.2/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AACCATCATMTGC-
----AACATATGTT
 C G T A C T G A A T G C A T G C C G T A C A G T A G T C G T C A A G C T G T A C G A C T A T C G G A T C A C G T
A C G T A C G T A C G T A C G T T C G A T G C A T G A C T C G A C A G T G T C A C G A T C A T G A C G T G A C T

Bhlha15/MA0607.1/Jaspar

Match Rank:7
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:AACCATCATMTGC
-----ACATATGG
 C G T A C T G A A T G C A T G C C G T A C A G T A G T C G T C A A G C T G T A C G A C T A T C G G A T C
A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AACCATCATMTGC---
----NVCAGCTGBBNN
 C G T A C T G A A T G C A T G C C G T A C A G T A G T C G T C A A G C T G T A C G A C T A T C G G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

GCM2/MA0767.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AACCATCATMTGC
TACCCGCATN---
 C G T A C T G A A T G C A T G C C G T A C A G T A G T C G T C A A G C T G T A C G A C T A T C G G A T C
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A A C G T A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AACCATCATMTGC-
----AGCAGCTGCT
 C G T A C T G A A T G C A T G C C G T A C A G T A G T C G T C A A G C T G T A C G A C T A T C G G A T C A C G T
A C G T A C G T A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T