Information for 3-CTKATTTTGAATYGTG (Motif 4)

A G T C A C G T A C G T C T G A G A C T A C G T A C G T C G A T A C T G C G T A G T C A A C G T A G C T A T C G A C G T C T A G
Reverse Opposite:
A G T C C G T A A T G C T C G A C G T A A C G T C G A T G T A C C G T A C G T A T G C A C T G A G A C T T G C A C G T A C T A G
p-value:1e-13
log p-value:-3.201e+01
Information Content per bp:1.727
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.4 +/- 28.4bp
Average Position of motif in Background58.9 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CTKATTTTGAATYGTG
----ATTTGAATT---
 A G T C A C G T A C G T C T G A G A C T A C G T A C G T C G A T A C T G C G T A G T C A A C G T A G C T A T C G A C G T C T A G
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CTKATTTTGAATYGTG---
----NNATNAATTGTTTNN
 A G T C A C G T A C G T C T G A G A C T A C G T A C G T C G A T A C T G C G T A G T C A A C G T A G C T A T C G A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:3
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CTKATTTTGAATYGTG--
-TNNTTTCGTATTNNANN
 A G T C A C G T A C G T C T G A G A C T A C G T A C G T C G A T A C T G C G T A G T C A A C G T A G C T A T C G A C G T C T A G A C G T A C G T
A C G T A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

Hoxd9/MA0913.1/Jaspar

Match Rank:4
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:CTKATTTTGAATYGTG
-----TTTTTATTGC-
 A G T C A C G T A C G T C T G A G A C T A C G T A C G T C G A T A C T G C G T A G T C A A C G T A G C T A T C G A C G T C T A G
A C G T A C G T A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:5
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CTKATTTTGAATYGTG------
------TTCAATTGTTCTAAAA
 A G T C A C G T A C G T C T G A G A C T A C G T A C G T C G A T A C T G C G T A G T C A A C G T A G C T A T C G A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

PB0068.1_Sox1_1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTKATTTTGAATYGTG-
-NNNTATTGAATTGNNN
 A G T C A C G T A C G T C T G A G A C T A C G T A C G T C G A T A C T G C G T A G T C A A C G T A G C T A T C G A C G T C T A G A C G T
A C G T T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CTKATTTTGAATYGTG-----
----GTATCTATTGTTCTTTA
 A G T C A C G T A C G T C T G A G A C T A C G T A C G T C G A T A C T G C G T A G T C A A C G T A G C T A T C G A C G T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A

PB0073.1_Sox7_1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CTKATTTTGAATYGTG-------
-TNNANNTCTATTGTTNTNNANN
 A G T C A C G T A C G T C T G A G A C T A C G T A C G T C G A T A C T G C G T A G T C A A C G T A G C T A T C G A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CTKATTTTGAATYGTG
-----TTTGAAACCG-
 A G T C A C G T A C G T C T G A G A C T A C G T A C G T C G A T A C T G C G T A G T C A A C G T A G C T A T C G A C G T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:10
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CTKATTTTGAATYGTG
------TTGACTTTT-
 A G T C A C G T A C G T C T G A G A C T A C G T A C G T C G A T A C T G C G T A G T C A A C G T A G C T A T C G A C G T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T