Information for 14-GHAAGCACATAST (Motif 33)

C T A G G T A C C G T A C G T A A C T G A T G C G C T A A G T C C G T A A G C T G T C A A T G C C G A T
Reverse Opposite:
C G T A A T C G A C G T C T G A C G A T T A C G C A G T A T C G A G T C A C G T A C G T C A G T A G T C
p-value:1e-6
log p-value:-1.573e+01
Information Content per bp:1.754
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif32.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets57.5 +/- 26.4bp
Average Position of motif in Background50.3 +/- 35.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GHAAGCACATAST-------
GGYAGCAYDTGCTDCCCNNN
 C T A G G T A C C G T A C G T A A C T G A T G C G C T A A G T C C G T A A G C T G T C A A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C T G C T A G G A T C C G T A C T A G A G T C T G C A G A C T C G T A A C G T T C A G A G T C A C G T C T G A A G T C A G T C G A T C C G T A T C A G T A C G

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GHAAGCACATAST---
AGCGGCACACACGCAA
 C T A G G T A C C G T A C G T A A C T G A T G C G C T A A G T C C G T A A G C T G T C A A T G C C G A T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GHAAGCACATAST
--AAGCACTTAA-
 C T A G G T A C C G T A C G T A A C T G A T G C G C T A A G T C C G T A A G C T G T C A A T G C C G A T
A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GHAAGCACATAST---
CGAAGCACACAAAATA
 C T A G G T A C C G T A C G T A A C T G A T G C G C T A A G T C C G T A A G C T G T C A A T G C C G A T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GHAAGCACATAST
GWAAYHTGAKMC-
 C T A G G T A C C G T A C G T A A C T G A T G C G C T A A G T C C G T A A G C T G T C A A T G C C G A T
C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GHAAGCACATAST
-WAAGTAAAYA--
 C T A G G T A C C G T A C G T A A C T G A T G C G C T A A G T C C G T A A G C T G T C A A T G C C G A T
A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GHAAGCACATAST
--AAGGATATNTN
 C T A G G T A C C G T A C G T A A C T G A T G C G C T A A G T C C G T A A G C T G T C A A T G C C G A T
A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GHAAGCACATAST
-CAAGGHCANV--
 C T A G G T A C C G T A C G T A A C T G A T G C G C T A A G T C C G T A A G C T G T C A A T G C C G A T
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GHAAGCACATAST
GTCAGCANNTN--
 C T A G G T A C C G T A C G T A A C T G A T G C G C T A A G T C C G T A A G C T G T C A A T G C C G A T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GHAAGCACATAST
-AAACCACANN--
 C T A G G T A C C G T A C G T A A C T G A T G C G C T A A G T C C G T A A G C T G T C A A T G C C G A T
A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T