Information for 4-CATMCTAACC (Motif 23)

T A G C C T G A A G C T T G C A A G T C C G A T C T G A G T C A A T G C T G A C
Reverse Opposite:
A C T G T A C G C A G T G A C T G C T A C T A G A C G T C T G A A G C T A T C G
p-value:1e-8
log p-value:-2.024e+01
Information Content per bp:1.609
Number of Target Sequences with motif113.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif5441.6
Percentage of Background Sequences with motif11.32%
Average Position of motif in Targets51.7 +/- 26.6bp
Average Position of motif in Background49.9 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CATMCTAACC--
-NNACTTACCTN
 T A G C C T G A A G C T T G C A A G T C C G A T C T G A G T C A A T G C T G A C A C G T A C G T
A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CATMCTAACC
NAGGTCACNNTGACC
 A C G T A C G T A C G T A C G T A C G T T A G C C T G A A G C T T G C A A G T C C G A T C T G A G T C A A T G C T G A C
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CATMCTAACC-
AGGNCANNGTGACCT
 A C G T A C G T A C G T A C G T T A G C C T G A A G C T T G C A A G T C C G A T C T G A G T C A A T G C T G A C A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

PB0181.1_Spdef_2/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CATMCTAACC-
GATAACATCCTAGTAG
 A C G T A C G T A C G T A C G T A C G T T A G C C T G A A G C T T G C A A G T C C G A T C T G A G T C A A T G C T G A C A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CATMCTAACC
AAGCACTTAA-
 A C G T T A G C C T G A A G C T T G C A A G T C C G A T C T G A G T C A A T G C T G A C
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CATMCTAACC-
---GCTAATCC
 T A G C C T G A A G C T T G C A A G T C C G A T C T G A G T C A A T G C T G A C A C G T
A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CATMCTAACC-
-----TGACCT
 T A G C C T G A A G C T T G C A A G T C C G A T C T G A G T C A A T G C T G A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CATMCTAACC--
-NNACTTGCCTT
 T A G C C T G A A G C T T G C A A G T C C G A T C T G A G T C A A T G C T G A C A C G T A C G T
A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CATMCTAACC--
CAGGTCACCGTGACCTT
 A C G T A C G T A C G T A C G T A C G T T A G C C T G A A G C T T G C A A G T C C G A T C T G A G T C A A T G C T G A C A C G T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CATMCTAACC
CCTGCTGAGH
 T A G C C T G A A G C T T G C A A G T C C G A T C T G A G T C A A T G C T G A C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A