Information for 4-GAKGTGTTCWCKC (Motif 13)

A C T G G T C A C A G T A C T G A C G T A C T G A C G T A G C T A G T C C G A T A G T C A C G T A G T C
Reverse Opposite:
A C T G G T C A T A C G C G T A A C T G C T G A C G T A A G T C C G T A A G T C G T C A A C G T G T A C
p-value:1e-10
log p-value:-2.419e+01
Information Content per bp:1.804
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif16.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets62.2 +/- 28.5bp
Average Position of motif in Background52.5 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GAKGTGTTCWCKC
---CTGTTCCTGG
 A C T G G T C A C A G T A C T G A C G T A C T G A C G T A G C T A G T C C G A T A G T C A C G T A G T C
A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

PB0117.1_Eomes_2/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GAKGTGTTCWCKC
GCGGAGGTGTCGCCTC
 A C G T A C G T A C G T A C T G G T C A C A G T A C T G A C G T A C T G A C G T A G C T A G T C C G A T A G T C A C G T A G T C
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

TBX5/MA0807.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAKGTGTTCWCKC
-AGGTGTGA----
 A C T G G T C A C A G T A C T G A C G T A C T G A C G T A G C T A G T C C G A T A G T C A C G T A G T C
A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T A C G T A C G T

TBX4/MA0806.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAKGTGTTCWCKC
-AGGTGTGA----
 A C T G G T C A C A G T A C T G A C G T A C T G A C G T A G C T A G T C C G A T A G T C A C G T A G T C
A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAKGTGTTCWCKC
-AGGTGTCA----
 A C T G G T C A C A G T A C T G A C G T A C T G A C G T A G C T A G T C C G A T A G T C A C G T A G T C
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAKGTGTTCWCKC
-AGGTGTTAAT--
 A C T G G T C A C A G T A C T G A C G T A C T G A C G T A G C T A G T C C G A T A G T C A C G T A G T C
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAKGTGTTCWCKC
AAGGTGTGAAA--
 A C T G G T C A C A G T A C T G A C G T A C T G A C G T A G C T A G T C C G A T A G T C A C G T A G T C
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GAKGTGTTCWCKC
---GTGACCTT--
 A C T G G T C A C A G T A C T G A C G T A C T G A C G T A G C T A G T C C G A T A G T C A C G T A G T C
A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAKGTGTTCWCKC
-AGGTGTGAAM--
 A C T G G T C A C A G T A C T G A C G T A C T G A C G T A G C T A G T C C G A T A G T C A C G T A G T C
A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAKGTGTTCWCKC
TAGGTGTGAAG--
 A C T G G T C A C A G T A C T G A C G T A C T G A C G T A G C T A G T C C G A T A G T C A C G T A G T C
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T A C G T