Information for 5-GAATTTCACA (Motif 3)

C A T G G T C A C T G A C G A T A G C T A C G T G A T C G C T A T A G C G T C A
Reverse Opposite:
C A G T A T C G C G A T C T A G T G C A T C G A G C T A G A C T C A G T G T A C
p-value:1e-13
log p-value:-3.130e+01
Information Content per bp:1.533
Number of Target Sequences with motif127.0
Percentage of Target Sequences with motif14.35%
Number of Background Sequences with motif3296.4
Percentage of Background Sequences with motif7.02%
Average Position of motif in Targets49.7 +/- 27.6bp
Average Position of motif in Background50.1 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0013.1_Eomes_1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GAATTTCACA-------
NNTTTTCACACCTTNNN
 C A T G G T C A C T G A C G A T A G C T A C G T G A T C G C T A T A G C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

CEBPA/MA0102.3/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GAATTTCACA---
--ATTGCACAATA
 C A T G G T C A C T G A C G A T A G C T A C G T G A T C G C T A T A G C G T C A A C G T A C G T A C G T
A C G T A C G T T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

TBR1/MA0802.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GAATTTCACA---
---TTTCACACCT
 C A T G G T C A C T G A C G A T A G C T A C G T G A T C G C T A T A G C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

EOMES/MA0800.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GAATTTCACA----
-NTTTTCACACCTT
 C A T G G T C A C T G A C G A T A G C T A C G T G A T C G C T A T A G C G T C A A C G T A C G T A C G T A C G T
A C G T C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAATTTCACA
GGGAATTTCC--
 A C G T A C G T C A T G G T C A C T G A C G A T A G C T A C G T G A T C G C T A T A G C G T C A
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAATTTCACA--
--HTTTCCCASG
 C A T G G T C A C T G A C G A T A G C T A C G T G A T C G C T A T A G C G T C A A C G T A C G T
A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAATTTCACA-
GGGATTGCATNN
 A C G T C A T G G T C A C T G A C G A T A G C T A C G T G A T C G C T A T A G C G T C A A C G T
T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAATTTCACA--
SSAATCCACANN
 C A T G G T C A C T G A C G A T A G C T A C G T G A T C G C T A T A G C G T C A A C G T A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

RELA/MA0107.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAATTTCACA
GGGAATTTCC--
 A C G T A C G T C A T G G T C A C T G A C G A T A G C T A C G T G A T C G C T A T A G C G T C A
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAATTTCACA---
TNGAATTTCATTNAN
 A C G T A C G T C A T G G T C A C T G A C G A T A G C T A C G T G A T C G C T A T A G C G T C A A C G T A C G T A C G T
A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A