Information for 9-TTATAAAACT (Motif 11)

A C G T A C G T C G T A A C G T G T C A C G T A C G T A C T G A A G T C A C G T
Reverse Opposite:
C G T A A C T G A G C T A C G T A C G T A C G T C G T A A C G T C G T A C G T A
p-value:1e-8
log p-value:-1.921e+01
Information Content per bp:1.944
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.2 +/- 34.1bp
Average Position of motif in Background74.9 +/- 17.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TTATAAAACT--
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G T C A C G T A C G T A C T G A A G T C A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TTATAAAACT
NCYAATAAAA--
 A C G T A C G T A C G T A C G T C G T A A C G T G T C A C G T A C G T A C T G A A G T C A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TTATAAAACT
NGYCATAAAWCH
 A C G T A C G T A C G T A C G T C G T A A C G T G T C A C G T A C G T A C T G A A G T C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TTATAAAACT
GTCATAAAAN-
 A C G T A C G T A C G T C G T A A C G T G T C A C G T A C G T A C T G A A G T C A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TTATAAAACT
CCAATAAAAA-
 A C G T A C G T A C G T C G T A A C G T G T C A C G T A C G T A C T G A A G T C A C G T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TTATAAAACT
GGTAATAAAAA-
 A C G T A C G T A C G T A C G T C G T A A C G T G T C A C G T A C G T A C T G A A G T C A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTATAAAACT
CCYMATAAAA--
 A C G T A C G T A C G T A C G T C G T A A C G T G T C A C G T A C G T A C T G A A G T C A C G T
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTATAAAACT
GCAATAAAA--
 A C G T A C G T A C G T C G T A A C G T G T C A C G T A C G T A C T G A A G T C A C G T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TTATAAAACT
RTTATGYAAB-
 A C G T A C G T A C G T C G T A A C G T G T C A C G T A C G T A C T G A A G T C A C G T
T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:10
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TTATAAAACT-
TAAGGTAATAAAATTA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G T C A C G T A C G T A C T G A A G T C A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A