Information for 9-TTRTARMRYYGGC (Motif 9)

A C G T A C G T C T A G A C G T C G T A C T G A G T C A C T G A A G T C A G C T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C T G A C T A G A G C T A C G T A G C T A C G T C G T A A G T C C G T A C G T A
p-value:1e-9
log p-value:-2.279e+01
Information Content per bp:1.831
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.5 +/- 25.5bp
Average Position of motif in Background32.5 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.57
Offset:8
Orientation:forward strand
Alignment:TTRTARMRYYGGC-
--------TTGGCA
 A C G T A C G T C T A G A C G T C G T A C T G A G T C A C T G A A G T C A G C T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:TTRTARMRYYGGC---
-------NTTGGCANN
 A C G T A C G T C T A G A C G T C G T A C T G A G T C A C T G A A G T C A G C T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

PB0187.1_Tcf7_2/Jaspar

Match Rank:3
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TTRTARMRYYGGC
NNNTTTNTAATACNG--
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T C G T A C T G A G T C A C T G A A G T C A G C T A C T G A C T G A G T C
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:4
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----TTRTARMRYYGGC
TAAGATTATAATACGG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T C G T A C T G A G T C A C T G A A G T C A G C T A C T G A C T G A G T C
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G A C G T A C G T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TTRTARMRYYGGC
VTTRCATAAY----
 A C G T A C G T A C G T C T A G A C G T C G T A C T G A G T C A C T G A A G T C A G C T A C T G A C T G A G T C
T C A G G A C T A C G T C T G A G A T C T C G A G A C T G T C A C T G A A G T C A C G T A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----TTRTARMRYYGGC
AAAGCTCGTAAAATTT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T C G T A C T G A G T C A C T G A A G T C A G C T A C T G A C T G A G T C
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:7
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----TTRTARMRYYGGC
TATAATTATAATATTC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T C G T A C T G A G T C A C T G A A G T C A G C T A C T G A C T G A G T C
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TTRTARMRYYGGC
GTCGTAAAAA----
 A C G T A C G T A C G T C T A G A C G T C G T A C T G A G T C A C T G A A G T C A G C T A C T G A C T G A G T C
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--TTRTARMRYYGGC
NGYCATAAAWCH---
 A C G T A C G T A C G T A C G T C T A G A C G T C G T A C T G A G T C A C T G A A G T C A G C T A C T G A C T G A G T C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--TTRTARMRYYGGC
CCTTTTATAGNC---
 A C G T A C G T A C G T A C G T C T A G A C G T C G T A C T G A G T C A C T G A A G T C A G C T A C T G A C T G A G T C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T A C G T A C G T