Information for 4-AACAGCGCCCCCT (Motif 2)

C G T A C G T A A G T C C G T A A T C G G T A C A C T G G T A C A G T C A G T C A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G T C A G A C T G A C T G A G T C A C T G A T G C A C G T A C T G A C G T C G A T
p-value:1e-24
log p-value:-5.594e+01
Information Content per bp:1.883
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.8 +/- 20.5bp
Average Position of motif in Background45.6 +/- 15.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0076.1_Sp4_1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AACAGCGCCCCCT----
GGTCCCGCCCCCTTCTC
 C G T A C G T A A G T C C G T A A T C G G T A C A C T G G T A C A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AACAGCGCCCCCT------
CNNBRGCGCCCCCTGSTGGC
 A C G T C G T A C G T A A G T C C G T A A T C G G T A C A C T G G T A C A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

Rhox11/MA0629.1/Jaspar

Match Rank:3
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AACAGCGCCCCCT
TCNNTTTACAGCGNNNT--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A A T C G G T A C A C T G G T A C A G T C A G T C A G T C A G T C A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T A C G T

PH0157.1_Rhox11_1/Jaspar

Match Rank:4
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AACAGCGCCCCCT
TCNNTTTACAGCGNNNT--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A A T C G G T A C A C T G G T A C A G T C A G T C A G T C A G T C A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:5
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------AACAGCGCCCCCT
TCNCTTTACAGCGNNNT--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A A T C G G T A C A C T G G T A C A G T C A G T C A G T C A G T C A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AACAGCGCCCCCT
-ACAAAGGNBCCT
 C G T A C G T A A G T C C G T A A T C G G T A C A C T G G T A C A G T C A G T C A G T C A G T C A C G T
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

INSM1/MA0155.1/Jaspar

Match Rank:7
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:AACAGCGCCCCCT----
-----CGCCCCCTGACA
 C G T A C G T A A G T C C G T A A T C G G T A C A C T G G T A C A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AACAGCGCCCCCT--------
--TAGCGCCCCCTGGTGGCCA
 C G T A C G T A A G T C C G T A A T C G G T A C A C T G G T A C A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AACAGCGCCCCCT
-GCTCCGCCCMCY
 C G T A C G T A A G T C C G T A A T C G G T A C A C T G G T A C A G T C A G T C A G T C A G T C A C G T
A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AACAGCGCCCCCT--------
-ANAGTGCCACCTGGTGGCCA
 C G T A C G T A A G T C C G T A A T C G G T A C A C T G G T A C A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A