Information for 2-GTCTTGGTCTTCT (Motif 5)

A C T G A C G T A G T C A C G T C G A T A C T G A C T G A C G T A G T C A G C T A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A C T G A A C T G C G T A A G T C G T A C G C T A C G T A A C T G C G T A A G T C
p-value:1e-9
log p-value:-2.162e+01
Information Content per bp:1.944
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 29.8bp
Average Position of motif in Background23.8 +/- 11.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GTCTTGGTCTTCT
-CCTTTGTTTT--
 A C T G A C G T A G T C A C G T C G A T A C T G A C T G A C G T A G T C A G C T A C G T A G T C A C G T
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GTCTTGGTCTTCT-
ANTCCTTTGTCTNNNN
 A C G T A C G T A C T G A C G T A G T C A C G T C G A T A C T G A C T G A C G T A G T C A G C T A C G T A G T C A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GTCTTGGTCTTCT
-------GCTTCC
 A C T G A C G T A G T C A C G T C G A T A C T G A C T G A C G T A G T C A G C T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GTCTTGGTCTTCT
-CCATTGTTTT--
 A C T G A C G T A G T C A C G T C G A T A C T G A C T G A C G T A G T C A G C T A C G T A G T C A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------GTCTTGGTCTTCT
NNTNNTGTCTGGNNTNG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T C G A T A C T G A C T G A C G T A G T C A G C T A C G T A G T C A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GTCTTGGTCTTCT
CTGTCTGG-------
 A C G T A C G T A C T G A C G T A G T C A C G T C G A T A C T G A C T G A C G T A G T C A G C T A C G T A G T C A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----GTCTTGGTCTTCT
VBSYGTCTGG-------
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T C G A T A C T G A C T G A C G T A G T C A G C T A C G T A G T C A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GTCTTGGTCTTCT
TTCAAGGTCAT--
 A C T G A C G T A G T C A C G T C G A T A C T G A C T G A C G T A G T C A G C T A C G T A G T C A C G T
A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GTCTTGGTCTTCT
-YCTTTGTTCC--
 A C T G A C G T A G T C A C G T C G A T A C T G A C T G A C G T A G T C A G C T A C G T A G T C A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:10
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---GTCTTGGTCTTCT-
NNANTGGTGGTCTTNNN
 A C G T A C G T A C G T A C T G A C G T A G T C A C G T C G A T A C T G A C T G A C G T A G T C A G C T A C G T A G T C A C G T A C G T
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G