Information for 5-AAGACAAGWGGTG (Motif 11)

C G T A C G T A C T A G G T C A G T A C C G T A C G T A T C A G C G T A A C T G T A C G A C G T T A C G
Reverse Opposite:
A T G C G T C A A T G C G T A C C G A T A G T C C G A T A C G T A C T G A C G T A G T C A C G T C G A T
p-value:1e-10
log p-value:-2.501e+01
Information Content per bp:1.745
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.78%
Number of Background Sequences with motif29.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets49.8 +/- 21.2bp
Average Position of motif in Background48.1 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAGACAAGWGGTG
AAAAGTCAA------
 A C G T A C G T C G T A C G T A C T A G G T C A G T A C C G T A C G T A T C A G C G T A A C T G T A C G A C G T T A C G
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AAGACAAGWGGTG
AAAACAAAGG---
 C G T A C G T A C T A G G T C A G T A C C G T A C G T A T C A G C G T A A C T G T A C G A C G T T A C G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGACAAGWGGTG
AAGGCAAGTGT--
 C G T A C G T A C T A G G T C A G T A C C G T A C G T A T C A G C G T A A C T G T A C G A C G T T A C G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAGACAAGWGGTG
-AGATAAGA----
 C G T A C G T A C T A G G T C A G T A C C G T A C G T A T C A G C G T A A C T G T A C G A C G T T A C G
A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AAGACAAGWGGTG
BCAGACWA------
 A C G T C G T A C G T A C T A G G T C A G T A C C G T A C G T A T C A G C G T A A C T G T A C G A C G T T A C G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAGACAAGWGGTG
CTCACACAATGGCGC
 A C G T A C G T C G T A C G T A C T A G G T C A G T A C C G T A C G T A T C A G C G T A A C T G T A C G A C G T T A C G
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

SCRT2/MA0744.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AAGACAAGWGGTG-
-ATGCAACAGGTGG
 C G T A C G T A C T A G G T C A G T A C C G T A C G T A T C A G C G T A A C T G T A C G A C G T T A C G A C G T
A C G T T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAGACAAGWGGTG-
GAGGTCAAAAGGTCA
 A C G T C G T A C G T A C T A G G T C A G T A C C G T A C G T A T C A G C G T A A C T G T A C G A C G T T A C G A C G T
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AAGACAAGWGGTG
--NTCAAGTGGN-
 C G T A C G T A C T A G G T C A G T A C C G T A C G T A T C A G C G T A A C T G T A C G A C G T T A C G
A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AAGACAAGWGGTG
AAAACAATGG---
 C G T A C G T A C T A G G T C A G T A C C G T A C G T A T C A G C G T A A C T G T A C G A C G T T A C G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T