Information for 1-AGCCCCCGSCGGGGCT (Motif 2)

C T G A A C T G A T G C A G T C A G T C A G T C A G T C A T C G A T C G G T A C A C T G A T C G A C T G A C T G A T G C A C G T
Reverse Opposite:
C G T A A T C G A G T C G T A C T A G C A G T C A C T G A T G C A T G C A C T G A C T G A C T G T C A G A T C G A G T C A G C T
p-value:1e-12
log p-value:-2.943e+01
Information Content per bp:1.810
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.3 +/- 19.0bp
Average Position of motif in Background31.4 +/- 3.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0102.1_Zic2_1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGCCCCCGSCGGGGCT
-CCCCCCCGGGGGGGT
 C T G A A C T G A T G C A G T C A G T C A G T C A G T C A T C G A T C G G T A C A C T G A T C G A C T G A C T G A T G C A C G T
A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGCCCCCGSCGGGGCT
--CCCCCCCGGGGGNN
 C T G A A C T G A T G C A G T C A G T C A G T C A G T C A T C G A T C G G T A C A C T G A T C G A C T G A C T G A T G C A C G T
A C G T A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

PB0103.1_Zic3_1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGCCCCCGSCGGGGCT
-CCCCCCCGGGGGGGT
 C T G A A C T G A T G C A G T C A G T C A G T C A G T C A T C G A T C G G T A C A C T G A T C G A C T G A C T G A T G C A C G T
A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

ZIC4/MA0751.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCCCCCGSCGGGGCT
GACCCCCCGCTGTGC-
 C T G A A C T G A T G C A G T C A G T C A G T C A G T C A T C G A T C G G T A C A C T G A T C G A C T G A C T G A T G C A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T

GLIS2/MA0736.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGCCCCCGSCGGGGCT
GACCCCCCGCGAAG--
 C T G A A C T G A T G C A G T C A G T C A G T C A G T C A T C G A T C G G T A C A C T G A T C G A C T G A C T G A T G C A C G T
A C T G T C G A A G T C G T A C G A T C G T A C G T A C G A T C C T A G A G T C C T A G C T G A G T C A A T C G A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGCCCCCGSCGGGGCT
GACCCCCCGCTGCGC-
 C T G A A C T G A T G C A G T C A G T C A G T C A G T C A T C G A T C G G T A C A C T G A T C G A C T G A C T G A T G C A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGCCCCCGSCGGGGCT
GGCCYCCTGCTGDGH-
 C T G A A C T G A T G C A G T C A G T C A G T C A G T C A T C G A T C G G T A C A C T G A T C G A C T G A C T G A T G C A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGCCCCCGSCGGGGCT
GACCCCCCGCTGTG--
 C T G A A C T G A T G C A G T C A G T C A G T C A G T C A T C G A T C G G T A C A C T G A T C G A C T G A C T G A T G C A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T

PB0204.1_Zfp740_2/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGCCCCCGSCGGGGCT
AAATTCCCCCCGGAAGT
 A C G T C T G A A C T G A T G C A G T C A G T C A G T C A G T C A T C G A T C G G T A C A C T G A T C G A C T G A C T G A T G C A C G T
C T G A C T G A C T G A C A G T G C A T G A T C G A T C A G T C A G T C A T G C A T G C T A C G A T C G C T G A C T G A T C A G A G C T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGCCCCCGSCGGGGCT
---TGCCCNNAGGGCA
 C T G A A C T G A T G C A G T C A G T C A G T C A G T C A T C G A T C G G T A C A C T G A T C G A C T G A C T G A T G C A C G T
A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A